RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 CRYGBP07316 175 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 SNRNP70P08621 437 aaKnown RBP12.25□□□□□ -0.45
SS18-206ENST00000577572 SAA1P0DJI8 122 aaPredicted RBP12.25□□□□□ -0.45
SS18-206ENST00000577572 PVALBP20472 110 aaPredicted RBP12.25□□□□□ -0.45
SS18-206ENST00000577572 RELBQ01201 579 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 PSG5Q15238 335 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 LRRC75BQ2VPJ9 315 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 RUSC1-AS1Q66K80 236 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 C11orf87Q6NUJ2 197 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 PRSS54Q6PEW0 395 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 BRD3OSQ6XYD6 125 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 MMD2Q8IY49 270 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 OR5B3Q8NH48 314 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 C17orf50Q8WW18 174 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 RAB40CQ96S21 281 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 TMEM14BQ9NUH8 114 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 KIAA1456Q9P272 454 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 PITPNC1Q9UKF7 332 aa12.25□□□□□ -0.45
SS18-206ENST00000577572 RRHO14718 337 aa12.24□□□□□ -0.45
SS18-206ENST00000577572 NBR2O15453 112 aa12.24□□□□□ -0.45
SS18-206ENST00000577572 MBPP02686 304 aaPredicted RBP12.24□□□□□ -0.45
SS18-206ENST00000577572 HNRNPCP07910 306 aaKnown RBP eCLIP12.24□□□□□ -0.45
SS18-206ENST00000577572 TAS2R30P59541 319 aa12.24□□□□□ -0.45
SS18-206ENST00000577572 SPCS3P61009 180 aa12.24□□□□□ -0.45
SS18-206ENST00000577572 C16orf82Q7Z2V1 217 aa12.24□□□□□ -0.45
SS18-206ENST00000577572 CIB3Q96Q77 187 aaPredicted RBP12.24□□□□□ -0.45
SS18-206ENST00000577572 SIGLEC9Q9Y336 463 aa12.24□□□□□ -0.45
SS18-206ENST00000577572 E5RGE8 158 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 INS-IGF2F8WCM5 200 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 G3V3Q6 166 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 K7EPK0 472 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 GPR137BO60478 399 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 RBMXL2O75526 392 aaKnown RBP12.23□□□□□ -0.45
SS18-206ENST00000577572 DEDDO75618 318 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 OR9G9P0C7N8 305 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 TMEM11P17152 192 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 HSPE1P61604 102 aaKnown RBP12.23□□□□□ -0.45
SS18-206ENST00000577572 RPL8P62917 257 aaKnown RBP12.23□□□□□ -0.45
SS18-206ENST00000577572 TNFRSF9Q07011 255 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 RAB32Q13637 225 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 HES1Q14469 280 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 TUSC1Q2TAM9 212 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 CXorf66Q5JRM2 361 aaPredicted RBP12.23□□□□□ -0.45
SS18-206ENST00000577572 SSX9Q7RTT3 188 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 NOXA1Q86UR1 476 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 PPP1R27Q86WC6 154 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 VKORC1L1Q8N0U8 176 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 FAM71E2Q8N5Q1 922 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 OR5R1Q8NH85 324 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 TMUB1Q9BVT8 246 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 NSG2Q9Y328 171 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 ABCA1O95477 2261 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 VPS13CQ709C8 3753 aa12.23□□□□□ -0.45
SS18-206ENST00000577572 IGHV3OR16-10A0A075B7F0 116 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 M0QZK8 103 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 WRBO00258 174 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 FGF16O43320 207 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 SYNGR2O43760 224 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 SLC25A17O43808 307 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 SCAF4O95104 1147 aaKnown RBP12.22□□□□□ -0.45
SS18-206ENST00000577572 ATP5IP56385 69 aaPredicted RBP12.22□□□□□ -0.45
SS18-206ENST00000577572 MMDQ15546 238 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 PRSS8Q16651 343 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 FAM120AOSQ5T036 256 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 MRPL41Q8IXM3 137 aaKnown RBP12.22□□□□□ -0.45
SS18-206ENST00000577572 WDR89Q96FK6 387 aaPredicted RBP12.22□□□□□ -0.45
SS18-206ENST00000577572 SSX3Q99909 188 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 SRSF8Q9BRL6 282 aaKnown RBP12.22□□□□□ -0.45
SS18-206ENST00000577572 COMMD5Q9GZQ3 224 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 PLSCR3Q9NRY6 295 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 METTL1Q9UBP6 276 aaKnown RBP12.22□□□□□ -0.45
SS18-206ENST00000577572 WSB1Q9Y6I7 421 aa12.22□□□□□ -0.45
SS18-206ENST00000577572 MAP1AP78559 2803 aaPredicted RBP12.22□□□□□ -0.45
SS18-206ENST00000577572 TRAV14DV4A0A0A6YYC5 116 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 ACTL6BO94805 426 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 OR2F2O95006 317 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 P2RY1P47900 373 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 S100A10P60903 97 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 CD300CQ08708 224 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 C5orf64Q2M2E5 130 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 HSD17B13Q7Z5P4 300 aaPredicted RBP12.21□□□□□ -0.45
SS18-206ENST00000577572 OR1L8Q8NGR8 309 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 PIFOQ8TCI5 191 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 RITA1Q96K30 269 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 SMIM8Q96KF7 97 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 RBM14Q96PK6 669 aaKnown RBP12.21□□□□□ -0.45
SS18-206ENST00000577572 CLCC1Q96S66 551 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 RNF126Q9BV68 326 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 YAE1D1Q9NRH1 226 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 TCF19Q9Y242 345 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 OR51B2Q9Y5P1 312 aa12.21□□□□□ -0.45
SS18-206ENST00000577572 FLNBO75369 2602 aaKnown RBP12.21□□□□□ -0.46
SS18-206ENST00000577572 CSMD1Q96PZ7 3565 aa12.2□□□□□ -0.46
SS18-206ENST00000577572 TSC22D2O75157 780 aa12.2□□□□□ -0.46
SS18-206ENST00000577572 SCGB1D2O95969 90 aa12.2□□□□□ -0.46
SS18-206ENST00000577572 IFNA17P01571 189 aa12.2□□□□□ -0.46
SS18-206ENST00000577572 CD99P14209 185 aa12.2□□□□□ -0.46
SS18-206ENST00000577572 C4BPBP20851 252 aa12.2□□□□□ -0.46
SS18-206ENST00000577572 NUP62P37198 522 aaPredicted RBP12.2□□□□□ -0.46
SS18-206ENST00000577572 PRCDQ00LT1 54 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 255.4 ms