RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FAM104AQ969W3 186 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 MED18Q9BUE0 208 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 ULBP1Q9BZM6 244 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 OR51I1Q9H343 314 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 MMP26Q9NRE1 261 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 GLS2Q9UI32 602 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 ZNF225Q9UK10 706 aa4.01□□□□□ -1.77
VPS53-219ENST00000576019 KLF13Q9Y2Y9 288 aaPredicted RBP4.01□□□□□ -1.77
VPS53-219ENST00000576019 TRAV8-3A0A0A6YYJ7 113 aa4□□□□□ -1.77
VPS53-219ENST00000576019 CENPVL3A0A0U1RRI6 287 aa4□□□□□ -1.77
VPS53-219ENST00000576019 DENRO43583 198 aaKnown RBP4□□□□□ -1.77
VPS53-219ENST00000576019 SS18L1O75177 396 aaPredicted RBP4□□□□□ -1.77
VPS53-219ENST00000576019 CNIH1O95406 144 aa4□□□□□ -1.77
VPS53-219ENST00000576019 CA2P00918 260 aa4□□□□□ -1.77
VPS53-219ENST00000576019 MT-ND4P03905 459 aa4□□□□□ -1.77
VPS53-219ENST00000576019 CXCL3P19876 107 aa4□□□□□ -1.77
VPS53-219ENST00000576019 IL3RAP26951 378 aa4□□□□□ -1.77
VPS53-219ENST00000576019 REG1BP48304 166 aa4□□□□□ -1.77
VPS53-219ENST00000576019 RAB14P61106 215 aa4□□□□□ -1.77
VPS53-219ENST00000576019 GTF2BQ00403 316 aa4□□□□□ -1.77
VPS53-219ENST00000576019 C1DQ13901 141 aaKnown RBP4□□□□□ -1.77
VPS53-219ENST00000576019 SPATA31B1PQ5VZV4 182 aa4□□□□□ -1.77
VPS53-219ENST00000576019 NT5DC3Q86UY8 548 aa4□□□□□ -1.77
VPS53-219ENST00000576019 OR4M2Q8NGB6 313 aa4□□□□□ -1.77
VPS53-219ENST00000576019 OR4M1Q8NGD0 313 aa4□□□□□ -1.77
VPS53-219ENST00000576019 PRSS27Q9BQR3 290 aa4□□□□□ -1.77
VPS53-219ENST00000576019 ZNF649Q9BS31 505 aa4□□□□□ -1.77
VPS53-219ENST00000576019 RTBDNQ9BSG5 229 aaPredicted RBP4□□□□□ -1.77
VPS53-219ENST00000576019 GGTLC1Q9BX51 225 aa4□□□□□ -1.77
VPS53-219ENST00000576019 CENPHQ9H3R5 247 aa4□□□□□ -1.77
VPS53-219ENST00000576019 WFDC1Q9HC57 220 aa4□□□□□ -1.77
VPS53-219ENST00000576019 DDX19AQ9NUU7 478 aaKnown RBP4□□□□□ -1.77
VPS53-219ENST00000576019 ARL2BPQ9Y2Y0 163 aa4□□□□□ -1.77
VPS53-219ENST00000576019 SLC22A7Q9Y694 548 aa4□□□□□ -1.77
VPS53-219ENST00000576019 APOBP04114 4563 aaKnown RBP4□□□□□ -1.77
VPS53-219ENST00000576019 DNAH2Q9P225 4427 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 PGPA6NDG6 321 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 SMIM9A6NGZ8 99 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 KRTAP16-1A8MUX0 517 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 UPK1AO00322 258 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 FADS1O60427 444 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 OR2B3O76000 313 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 OR2A4O95047 310 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 IGLV2-8P01709 118 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 REG1AP05451 166 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 OR4E1P0C645 316 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 CECR9P0C854 216 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 CXCL2P19875 107 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 AGTR1P30556 359 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 CCR7P32248 378 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 LYZP61626 148 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 MEF2CQ06413 473 aaPredicted RBP3.99□□□□□ -1.77
VPS53-219ENST00000576019 DAZ2Q13117 558 aaKnown RBP3.99□□□□□ -1.77
VPS53-219ENST00000576019 SKP2Q13309 424 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 RSU1Q15404 277 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 SLC9A3R2Q15599 337 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 ATP6AP1LQ52LC2 224 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 AKAP14Q86UN6 197 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 OR2M7Q8NG81 312 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 OR11L1Q8NGX0 322 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 OR10D3Q8NH80 312 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 ASB17Q8WXJ9 295 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 IMP4Q96G21 291 aaKnown RBP3.99□□□□□ -1.77
VPS53-219ENST00000576019 IMMP1LQ96LU5 166 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 ZIM3Q96PE6 472 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 OR2A7Q96R45 310 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 CAMK2N2Q96S95 79 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 ANAPC13Q9BS18 74 aa3.99□□□□□ -1.77
VPS53-219ENST00000576019 ZNF436Q9C0F3 470 aaPredicted RBP3.99□□□□□ -1.77
VPS53-219ENST00000576019 DAZ3Q9NR90 486 aaKnown RBP3.99□□□□□ -1.77
VPS53-219ENST00000576019 PAQR5Q9NXK6 330 aaPredicted RBP3.99□□□□□ -1.77
VPS53-219ENST00000576019 FLG2Q5D862 2391 aaPredicted RBP3.99□□□□□ -1.77
VPS53-219ENST00000576019 IGHV3-66A0A0C4DH42 116 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 CXorf51AA0A1B0GTR3 108 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 WI2-2373I1.2A0A1W2PRP0 233 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 KLRC4O43908 158 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 KCNK2O95069 426 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 SLC25A14O95258 325 aaPredicted RBP3.98□□□□□ -1.77
VPS53-219ENST00000576019 SOD1P00441 154 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 LINC00614P0C842 121 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 ME2P23368 584 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 CFL1P23528 166 aaKnown RBP3.98□□□□□ -1.77
VPS53-219ENST00000576019 CBX5P45973 191 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 OR2F1Q13607 317 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 C15orf32Q32M92 178 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 MPV17L2Q567V2 206 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 UBE2NLQ5JXB2 153 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 SLC25A30Q5SVS4 291 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 NXNL2Q5VZ03 156 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 OR10K2Q6IF99 312 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 NAA40Q86UY6 237 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 NIT1Q86X76 327 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 OR51D1Q8NGF3 324 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 TWIST2Q8WVJ9 160 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 MRPL48Q96GC5 212 aaKnown RBP3.98□□□□□ -1.77
VPS53-219ENST00000576019 CAPZA3Q96KX2 299 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 OR52B2Q96RD2 323 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 SDHCQ99643 169 aaPredicted RBP3.98□□□□□ -1.77
VPS53-219ENST00000576019 TSGA10Q9BZW7 698 aa3.98□□□□□ -1.77
VPS53-219ENST00000576019 FGF23Q9GZV9 251 aaPredicted RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms