RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 MARC2Q969Z3 335 aa12.94□□□□□ -0.34
CCDC40-211ENST00000574099 SPAG8Q99932 426 aaPredicted RBP12.94□□□□□ -0.34
CCDC40-211ENST00000574099 OR51E2Q9H255 320 aa12.94□□□□□ -0.34
CCDC40-211ENST00000574099 PSORS1C1Q9UIG5 152 aa12.94□□□□□ -0.34
CCDC40-211ENST00000574099 KCNK7Q9Y2U2 307 aa12.94□□□□□ -0.34
CCDC40-211ENST00000574099 AK6Q9Y3D8 172 aaKnown RBP12.94□□□□□ -0.34
CCDC40-211ENST00000574099 KBTBD11O94819 623 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 CLEC3BP05452 202 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 C8orf88P0DMB2 117 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 MYOD1P15172 320 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 PSMB6P28072 239 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 RBMS2Q15434 407 aaKnown RBP12.93□□□□□ -0.34
CCDC40-211ENST00000574099 MED22Q15528 200 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 OR5B3Q8NH48 314 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 SLC2A9Q9NRM0 540 aa12.93□□□□□ -0.34
CCDC40-211ENST00000574099 MRPL27Q9P0M9 148 aaKnown RBP12.93□□□□□ -0.34
CCDC40-211ENST00000574099 A0A075B6Q4 140 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 RAB27BO00194 218 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 DHFRP00374 187 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 CDK1P06493 297 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 UCHL1P09936 223 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 ZNF735P0CB33 412 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 DEFA4P12838 97 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 RPL30P62888 115 aaKnown RBP12.92□□□□□ -0.34
CCDC40-211ENST00000574099 LAIR2Q6ISS4 152 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 H1FOOQ8IZA3 346 aaPredicted RBP12.92□□□□□ -0.34
CCDC40-211ENST00000574099 C11orf45Q8TAV5 145 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 TMEM203Q969S6 136 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 RAB3CQ96E17 227 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 C5orf66Q9H5L9 145 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 MAP6D1Q9H9H5 199 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 MRPS7Q9Y2R9 242 aaKnown RBP12.92□□□□□ -0.34
CCDC40-211ENST00000574099 UFC1Q9Y3C8 167 aa12.92□□□□□ -0.34
CCDC40-211ENST00000574099 DNAH6Q9C0G6 4158 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 DENRO43583 198 aaKnown RBP12.91□□□□□ -0.34
CCDC40-211ENST00000574099 IFNA4P05014 189 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 CRYGCP07315 174 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 GNB3P16520 340 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 CRHBPP24387 322 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 PSMD7P51665 324 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 BPIFB6Q8NFQ5 453 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 FAM3DQ96BQ1 224 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 OR2A7Q96R45 310 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 MFFQ9GZY8 342 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 PRELID3BQ9Y3B1 194 aa12.91□□□□□ -0.34
CCDC40-211ENST00000574099 IGLV11-55A0A075B6I3 123 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 IGKV1D-8A0A087WSZ0 117 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 TRBV7-1A0A0A6YYK4 115 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 TMEM272A0A1B0GTI8 110 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 TSPAN4O14817 238 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 DIRAS3O95661 229 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 RPA2P15927 270 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 HIST1H1BP16401 226 aaKnown RBP12.9□□□□□ -0.34
CCDC40-211ENST00000574099 GALP22466 123 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 ARFRP1Q13795 201 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 ZNF124Q15973 351 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 C2orf76Q3KRA6 126 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 PLET1Q6UQ28 207 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 SSX9Q7RTT3 188 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 APRG1Q8IVJ8 170 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 ZNF645Q8N7E2 425 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 TMEM167AQ8TBQ9 72 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 C2CD4CQ8TF44 421 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 GALNT14Q96FL9 552 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 CXorf58Q96LI9 332 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 RARRES2Q99969 163 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 MND1Q9BWT6 205 aa12.9□□□□□ -0.34
CCDC40-211ENST00000574099 DEFB4AO15263 64 aa12.89□□□□□ -0.35
CCDC40-211ENST00000574099 XRCC3O43542 346 aa12.89□□□□□ -0.35
CCDC40-211ENST00000574099 GNAO1P09471 354 aa12.89□□□□□ -0.35
CCDC40-211ENST00000574099 ELLP55199 621 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-211ENST00000574099 PUSL1Q8N0Z8 303 aaKnown RBP12.89□□□□□ -0.35
CCDC40-211ENST00000574099 DHRSXQ8N5I4 330 aa12.89□□□□□ -0.35
CCDC40-211ENST00000574099 VSTM2AQ8TAG5 236 aa12.89□□□□□ -0.35
CCDC40-211ENST00000574099 ZNF502Q8TBZ5 544 aa12.89□□□□□ -0.35
CCDC40-211ENST00000574099 CD300LFQ8TDQ1 290 aa12.89□□□□□ -0.35
CCDC40-211ENST00000574099 IGHV3OR16-8A0A075B7F1 116 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 MFNGO00587 321 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 CD36P16671 472 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 MAS1LP35410 378 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 HES5Q5TA89 166 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 LIPKQ5VXJ0 399 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 C10orf67Q8IYJ2 551 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 OR4S2Q8NH73 311 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 TCTEX1D2Q8WW35 142 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 TMEM190Q8WZ59 177 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 SPATA2Q9UM82 520 aa12.88□□□□□ -0.35
CCDC40-211ENST00000574099 RBMX2Q9Y388 322 aaKnown RBP12.88□□□□□ -0.35
CCDC40-211ENST00000574099 OR4C46A6NHA9 309 aa12.87□□□□□ -0.35
CCDC40-211ENST00000574099 CGB1A6NKQ9 187 aa12.87□□□□□ -0.35
CCDC40-211ENST00000574099 IGLL5B9A064 214 aa12.87□□□□□ -0.35
CCDC40-211ENST00000574099 ZNF207O43670 478 aaKnown RBP12.87□□□□□ -0.35
CCDC40-211ENST00000574099 NFYAP23511 347 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-211ENST00000574099 LAMTOR1Q6IAA8 161 aa12.87□□□□□ -0.35
CCDC40-211ENST00000574099 TMEM91Q6ZNR0 172 aa12.87□□□□□ -0.35
CCDC40-211ENST00000574099 C8orf59Q8N0T1 100 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-211ENST00000574099 OR11H2Q8NH07 326 aa12.87□□□□□ -0.35
CCDC40-211ENST00000574099 GPHA2Q96T91 129 aa12.87□□□□□ -0.35
CCDC40-211ENST00000574099 ZNF436Q9C0F3 470 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-211ENST00000574099 RAB22AQ9UL26 194 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms