RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CX3CL1P78423 397 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 CENPVQ7Z7K6 275 aaPredicted RBP16.23■□□□□ 0.19
VPS53-210ENST00000571456 STPG2Q8N412 459 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 KLHDC1Q8N7A1 406 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 GALNT14Q96FL9 552 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 TSC22D3Q99576 134 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 NAA60Q9H7X0 242 aa16.23■□□□□ 0.19
VPS53-210ENST00000571456 CRYM-AS1A6NIL9 109 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 MARCH11A6NNE9 402 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 NDUFB6O95139 128 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 CA2P00918 260 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 ANXA3P12429 323 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 VDAC1P21796 283 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 UCP1P25874 307 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 PRSS8Q16651 343 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 ZNF585BQ52M93 769 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 TMEM128Q5BJH2 165 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 MZT2BQ6NZ67 158 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 DMBX1Q8NFW5 382 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 R3HDM4Q96D70 268 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 HSPB9Q9BQS6 159 aa16.22■□□□□ 0.19
VPS53-210ENST00000571456 TENM3Q9P273 2699 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 SH2D7A6NKC9 451 aaPredicted RBP16.21■□□□□ 0.19
VPS53-210ENST00000571456 S1PR2O95136 353 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 CNIH1O95406 144 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 SRPXP78539 464 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 ASAH1Q13510 395 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 WIPF2Q8TF74 440 aaPredicted RBP16.21■□□□□ 0.19
VPS53-210ENST00000571456 ARPC1AQ92747 370 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 TMEM222Q9H0R3 208 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 VSIG4Q9Y279 399 aa16.21■□□□□ 0.19
VPS53-210ENST00000571456 PSMB11A5LHX3 300 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 PLA2G10O15496 165 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 IL6RP08887 468 aaPredicted RBP16.2■□□□□ 0.18
VPS53-210ENST00000571456 FXYD3Q14802 87 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 OR4A47Q6IF82 309 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 CENPSQ8N2Z9 138 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 OR4X2Q8NGF9 303 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 IL22RA2Q969J5 263 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 CITED1Q99966 193 aa16.2■□□□□ 0.18
VPS53-210ENST00000571456 FCN1O00602 326 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 CDS2O95674 445 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 DEFA1P59665 94 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 DEFA3P59666 94 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 RPL8P62917 257 aaKnown RBP16.19■□□□□ 0.18
VPS53-210ENST00000571456 TMEM95Q3KNT9 176 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 AKIRIN2Q53H80 203 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 THOC7Q6I9Y2 204 aaKnown RBP16.19■□□□□ 0.18
VPS53-210ENST00000571456 RBMXL1Q96E39 390 aaKnown RBP16.19■□□□□ 0.18
VPS53-210ENST00000571456 TP53RKQ96S44 253 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 SPIN2AQ99865 258 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 SPIN2BQ9BPZ2 258 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 ZNF430Q9H8G1 570 aaPredicted RBP16.19■□□□□ 0.18
VPS53-210ENST00000571456 PARP11Q9NR21 331 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 TMEM140Q9NV12 185 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 FKBP11Q9NYL4 201 aa16.19■□□□□ 0.18
VPS53-210ENST00000571456 LINC00854A0A1B0GVQ3 168 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 ATP6V0E1O15342 81 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 SLC6A1P30531 599 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 CCR6P51684 374 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 TRIM16LQ309B1 348 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 TEX38Q6PEX7 206 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 FAM219AQ8IW50 185 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 OR5AU1Q8NGC0 362 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 CLCC1Q96S66 551 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 TPSG1Q9NRR2 321 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 NUBP2Q9Y5Y2 271 aa16.18■□□□□ 0.18
VPS53-210ENST00000571456 TRAV41A0A0B4J266 112 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 UPK2O00526 184 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 FBXO24O75426 580 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 SNAPC5O75971 98 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 KRASP01116 189 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 ELANEP08246 267 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 OR5AC1P0C628 307 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 AKR1C4P17516 323 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 BTCP35070 178 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 TNXAQ16473 311 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 SSX9Q7RTT3 188 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 H2BFWTQ7Z2G1 175 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 TMED4Q7Z7H5 227 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 SLC25A42Q86VD7 318 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 VKORC1L1Q8N0U8 176 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 OR5M8Q8NGP6 311 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 ABHD5Q8WTS1 349 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 GLYATL2Q8WU03 294 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 RBPMSQ93062 196 aaKnown RBP16.17■□□□□ 0.18
VPS53-210ENST00000571456 TMEM230Q96A57 120 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 SEC22AQ96IW7 307 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 TMEM56Q96MV1 263 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 SRSF8Q9BRL6 282 aaKnown RBP16.17■□□□□ 0.18
VPS53-210ENST00000571456 CACFD1Q9UGQ2 172 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 PRNDQ9UKY0 176 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 TMEM56-RWDD3S4R434 201 aa16.17■□□□□ 0.18
VPS53-210ENST00000571456 LINC01548A6NM66 108 aa16.16■□□□□ 0.18
VPS53-210ENST00000571456 OPN1MWP04001 364 aa16.16■□□□□ 0.18
VPS53-210ENST00000571456 OPN1MW2P0DN77 364 aa16.16■□□□□ 0.18
VPS53-210ENST00000571456 OPN1MW3P0DN78 364 aa16.16■□□□□ 0.18
VPS53-210ENST00000571456 HLA-GP17693 338 aa16.16■□□□□ 0.18
VPS53-210ENST00000571456 MRGPRG-AS1Q2M3A8 158 aa16.16■□□□□ 0.18
VPS53-210ENST00000571456 HSD17B13Q7Z5P4 300 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms