RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 KBTBD11O94819 623 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 HRASP01112 189 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 HSPB1P04792 205 aaKnown RBP11.59□□□□□ -0.55
VPS39-210ENST00000568357 RCVRNP35243 200 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 SLURP1P55000 103 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 TMBIM6P55061 237 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 DEFA5Q01523 94 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 RNASE12Q5GAN4 147 aaKnown RBP11.59□□□□□ -0.55
VPS39-210ENST00000568357 AADACL3Q5VUY0 350 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 OR51H1Q8NH63 302 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 VSTM2AQ8TAG5 236 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 RAB2BQ8WUD1 216 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 TINAGL1Q9GZM7 467 aaPredicted RBP11.59□□□□□ -0.55
VPS39-210ENST00000568357 FXYD6Q9H0Q3 95 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 COA4Q9NYJ1 87 aa11.59□□□□□ -0.55
VPS39-210ENST00000568357 C13orf42A0A1B0GVH6 325 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 A0A1B0GW64 132 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 HMX3A6NHT5 357 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 CREBL2O60519 120 aaPredicted RBP11.58□□□□□ -0.56
VPS39-210ENST00000568357 HPRT1P00492 218 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 PRH1P02810 166 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 IL6RP08887 468 aaPredicted RBP11.58□□□□□ -0.56
VPS39-210ENST00000568357 OR9G9P0C7N8 305 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 MYOD1P15172 320 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 TSPAN5P62079 268 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 CATR1Q13166 79 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 C9orf66Q5T8R8 295 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 OR4A47Q6IF82 309 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 C11orf87Q6NUJ2 197 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 LAX1Q8IWV1 398 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 OR52I2Q8NH67 350 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 DYNC2LI1Q8TCX1 351 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 SPIN2AQ99865 258 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 SPIN2BQ9BPZ2 258 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 RYR2Q92736 4967 aa11.58□□□□□ -0.56
VPS39-210ENST00000568357 DNAH9Q9NYC9 4486 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 TRAV3A0A0B4J244 114 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 TEX22C9J3V5 150 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 M0QYG6 137 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 MPPED1O15442 326 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 RGS5O15539 181 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 TPPPO94811 219 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 RLN1P04808 185 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 TAS2R31P59538 309 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 ZNF45Q02386 682 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 TTC9CQ8N5M4 171 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 BORCS5Q969J3 196 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 BET1LQ9NYM9 111 aa11.57□□□□□ -0.56
VPS39-210ENST00000568357 A0A0G2JLM5 398 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 ANKRD34BA5PLL1 514 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 GPR31O00270 319 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 OVOL1O14753 267 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 S1PR2O95136 353 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 ZNF735P0CB33 412 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 F2RP25116 425 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 MAS1LP35410 378 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 RPL8P62917 257 aaKnown RBP11.56□□□□□ -0.56
VPS39-210ENST00000568357 DGCR2P98153 550 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 POU2AF1Q16633 256 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 CMTM1Q8IZ96 169 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 CD300LFQ8TDQ1 290 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 DGCR14Q96DF8 476 aaKnown RBP11.56□□□□□ -0.56
VPS39-210ENST00000568357 FYTTD1Q96QD9 318 aaKnown RBP11.56□□□□□ -0.56
VPS39-210ENST00000568357 BCL7BQ9BQE9 202 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 AIFM2Q9BRQ8 373 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 PLEKHA2Q9HB19 425 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 HRASLSQ9HDD0 168 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 MTFP1Q9UDX5 166 aa11.56□□□□□ -0.56
VPS39-210ENST00000568357 TRBV9A0A0B4J1U6 114 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 CGB1A6NKQ9 187 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 H3BMQ9 156 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 UPK2O00526 184 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 CD3DP04234 171 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 RPA2P15927 270 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 NQO2P16083 231 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 HLA-GP17693 338 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 LPAR6P43657 344 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 RPL27AP46776 148 aaKnown RBP11.55□□□□□ -0.56
VPS39-210ENST00000568357 RHOGP84095 191 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 ZNF585BQ52M93 769 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 PHLDA2Q53GA4 152 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 DEFB121Q5J5C9 76 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 ZNF343Q6P1L6 599 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 C19orf35Q6ZS72 473 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 OR4A5Q8NH83 315 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 FCAMRQ8WWV6 532 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 USMG5Q96IX5 58 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 RSRP1Q9BUV0 290 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 RANGRFQ9HD47 186 aaPredicted RBP11.55□□□□□ -0.56
VPS39-210ENST00000568357 AKIP1Q9NQ31 210 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 SLC2A9Q9NRM0 540 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 CCDC59Q9P031 241 aaKnown RBP11.55□□□□□ -0.56
VPS39-210ENST00000568357 CEPT1Q9Y6K0 416 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 TNCP24821 2201 aa11.55□□□□□ -0.56
VPS39-210ENST00000568357 TRBV12-3P01733 135 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 AREGP15514 252 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 ECI1P42126 302 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 UCP3P55916 312 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 LPCAT3Q6P1A2 487 aa11.54□□□□□ -0.56
VPS39-210ENST00000568357 DMBX1Q8NFW5 382 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms