RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 TMEM18Q96B42 140 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 NGBQ9NPG2 151 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 MMP26Q9NRE1 261 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 FAM212BQ9NTI7 297 aaPredicted RBP4.86□□□□□ -1.63
VPS39-209ENST00000568029 OR1A1Q9P1Q5 309 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 FBXL17Q9UF56 701 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 NDRG3Q9UGV2 375 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 KCNS2Q9ULS6 477 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 PPP1R3CQ9UQK1 317 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 RCL1Q9Y2P8 373 aaKnown RBP4.86□□□□□ -1.63
VPS39-209ENST00000568029 NBEAL2Q6ZNJ1 2754 aa4.86□□□□□ -1.63
VPS39-209ENST00000568029 TRAV39A0A0B4J263 110 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 IGHV3-64DA0A0J9YX35 117 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 SRRM5B3KS81 715 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 USP17L23D6RBM5 183 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 LGALS8O00214 317 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 TNFSF12O43508 249 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 HBZP02008 142 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 FAM157CP0CG43 387 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 PTAFRP25105 342 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 GABRA2P47869 451 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 OR3A1P47881 315 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 SULT1A2P50226 295 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 CAV2P51636 162 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 PAX5Q02548 391 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 AESQ08117 197 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 CATR1Q13166 79 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 NMSQ5H8A3 153 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 C5orf24Q7Z6I8 188 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 COMMD1Q8N668 190 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 SUN5Q8TC36 379 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 TMEM158Q8WZ71 300 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 PERPQ96FX8 193 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 RAB40CQ96S21 281 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 C19orf24Q9BVV8 132 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 SMIM3Q9BZL3 60 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 TOLLIPQ9H0E2 274 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 ARV1Q9H2C2 271 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 NCOR1P1Q9H4R4 102 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 RNF7Q9UBF6 113 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 IL19Q9UHD0 177 aa4.85□□□□□ -1.63
VPS39-209ENST00000568029 STRAPQ9Y3F4 350 aaKnown RBP4.85□□□□□ -1.63
VPS39-209ENST00000568029 IGLV3-9A0A075B6K5 115 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 C12orf77C9JDV5 145 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 TRIM77I1YAP6 450 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 SPRY3O43610 288 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 SLC25A17O43808 307 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 CHST1O43916 411 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 SSSCA1O60232 199 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 PITX3O75364 302 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 MED6O75586 246 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 LHBP01229 141 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 PSG2P11465 335 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 IRF2P14316 349 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 LPAR6P43657 344 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 CEBPDP49716 269 aaPredicted RBP4.84□□□□□ -1.63
VPS39-209ENST00000568029 AKR1C2P52895 323 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 POLR2GP62487 172 aaKnown RBP eCLIP4.84□□□□□ -1.63
VPS39-209ENST00000568029 HTD2P86397 168 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 TNFAIP6P98066 277 aaPredicted RBP4.84□□□□□ -1.63
VPS39-209ENST00000568029 EWSR1Q01844 656 aaKnown RBP eCLIP4.84□□□□□ -1.63
VPS39-209ENST00000568029 BAXQ07812 192 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 PJVKQ0ZLH3 352 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 ZNF266Q14584 549 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 CXorf66Q5JRM2 361 aaPredicted RBP4.84□□□□□ -1.63
VPS39-209ENST00000568029 LRP11Q86VZ4 500 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 STX12Q86Y82 276 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 FAM219AQ8IW50 185 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 SPAG16Q8N0X2 631 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 DRAM1Q8N682 238 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 CD177Q8N6Q3 437 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 ZNF645Q8N7E2 425 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 NUP37Q8NFH4 326 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 BPIFCQ8NFQ6 507 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 DMBX1Q8NFW5 382 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 OR1S2Q8NGQ3 325 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 OR51H1Q8NH63 302 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 OR1L1Q8NH94 360 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 CD300LFQ8TDQ1 290 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 MRGPRDQ8TDS7 321 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 RND1Q92730 232 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 GPR146Q96CH1 333 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 NARS2Q96I59 477 aaKnown RBP4.84□□□□□ -1.63
VPS39-209ENST00000568029 SMIM8Q96KF7 97 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 LINC00052Q96N35 136 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 OR2V2Q96R30 315 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 GINS3Q9BRX5 216 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 C11orf1Q9H5F2 150 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 TREM1Q9NP99 234 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 PARP11Q9NR21 331 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 LYRM2Q9NU23 88 aaPredicted RBP4.84□□□□□ -1.63
VPS39-209ENST00000568029 OR6C3Q9NZP0 311 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 FAM96BQ9Y3D0 163 aa4.84□□□□□ -1.63
VPS39-209ENST00000568029 RAI1Q7Z5J4 1906 aaPredicted RBP4.84□□□□□ -1.64
VPS39-209ENST00000568029 EPPK1P58107 5090 aaKnown RBP4.83□□□□□ -1.64
VPS39-209ENST00000568029 ZNF407Q9C0G0 2248 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 ODAMA1E959 279 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 TMEM218A2RU14 115 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 FAM24AA6NFZ4 105 aa4.83□□□□□ -1.64
VPS39-209ENST00000568029 ZSCAN5BA6NJL1 495 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms