RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ZNF66Q6ZN08 573 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 TCTEX1D1Q8N7M0 179 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 TMEM170AQ8WVE7 144 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 NPCDR1Q9BY65 106 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 PRO1933Q9H354 126 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 FAM215AQ9Y5M1 114 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 J3KRW8 73 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 EREGO14944 169 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 HAND1O96004 215 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 PDLIM4P50479 330 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 PPP1CBP62140 327 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 ZNF816Q0VGE8 651 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-204ENST00000566354 GUSBP1Q15486 140 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 VWC2Q2TAL6 325 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 DMRTA1Q5VZB9 504 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 CNEP1R1Q8N9A8 125 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 OR1L1Q8NH94 360 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 NEIL1Q96FI4 390 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-204ENST00000566354 SMG1Q96Q15 3661 aaKnown RBP11.04□□□□□ -0.64
VPS4A-204ENST00000566354 KIAA2026Q5HYC2 2103 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 USP24Q9UPU5 2620 aa11.04□□□□□ -0.64
VPS4A-204ENST00000566354 TMEM8BA6NDV4 472 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 C12orf77C9JDV5 145 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 CLDN14O95500 239 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 SRP14P37108 136 aaKnown RBP11.03□□□□□ -0.64
VPS4A-204ENST00000566354 OR3A1P47881 315 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 RPL30P62888 115 aaKnown RBP11.03□□□□□ -0.64
VPS4A-204ENST00000566354 GABRA6Q16445 453 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 FAM214BQ7L5A3 538 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 OR2T10Q8NGZ9 312 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 SNHG12Q9BXW3 62 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 OR2J1Q9GZK6 312 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 OOEPA6NGQ2 149 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 C17orf112F2Z3M2 114 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 RAB29O14966 203 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 PSPNO60542 156 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 PAGE4O60829 102 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 ZG16O60844 167 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 S1PR2O95136 353 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 GCGP01275 180 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 GYPAP02724 150 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 TYMSP04818 313 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 KIR2DL2P43627 348 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-204ENST00000566354 KLF3P57682 345 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-204ENST00000566354 LY6DQ14210 128 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 ACOT6Q3I5F7 207 aaPredicted RBP11.03□□□□□ -0.64
VPS4A-204ENST00000566354 SLC35E4Q6ICL7 350 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 VWA1Q6PCB0 445 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 FAM57AQ8TBR7 257 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 GATAD1Q8WUU5 269 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 NINJ1Q92982 152 aa11.03□□□□□ -0.64
VPS4A-204ENST00000566354 GNB2P62879 340 aa11.02□□□□□ -0.64
VPS4A-204ENST00000566354 TLE1Q04724 770 aa11.02□□□□□ -0.64
VPS4A-204ENST00000566354 GFRALQ6UXV0 394 aa11.02□□□□□ -0.64
VPS4A-204ENST00000566354 BHLHA15Q7RTS1 189 aaPredicted RBP11.02□□□□□ -0.64
VPS4A-204ENST00000566354 H2BFWTQ7Z2G1 175 aa11.02□□□□□ -0.64
VPS4A-204ENST00000566354 MYPOPQ86VE0 399 aaPredicted RBP11.02□□□□□ -0.64
VPS4A-204ENST00000566354 ZNF808Q8N4W9 903 aaPredicted RBP11.02□□□□□ -0.64
VPS4A-204ENST00000566354 C5orf30Q96GV9 206 aa11.02□□□□□ -0.64
VPS4A-204ENST00000566354 ELOVL1Q9BW60 279 aa11.02□□□□□ -0.64
VPS4A-204ENST00000566354 HES4Q9HCC6 221 aa11.02□□□□□ -0.64
VPS4A-204ENST00000566354 RELNP78509 3460 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 MBD3L4A6NDZ8 208 aaPredicted RBP11.02□□□□□ -0.65
VPS4A-204ENST00000566354 MBD3L3A6NE82 208 aaPredicted RBP11.02□□□□□ -0.65
VPS4A-204ENST00000566354 MBD3L5A6NJ08 208 aaPredicted RBP11.02□□□□□ -0.65
VPS4A-204ENST00000566354 C17orf98A8MV24 154 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 GRPP07492 148 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 BRWD1-AS2P59051 145 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 TFF3Q07654 80 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 KLRB1Q12918 225 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 ACTL10Q5JWF8 245 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 KCNIP4Q6PIL6 250 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 OR52L2PQ8NGH6 319 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 MBD3L2Q8NHZ7 208 aaPredicted RBP11.02□□□□□ -0.65
VPS4A-204ENST00000566354 OR6C3Q9NZP0 311 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 POLEQ07864 2286 aa11.02□□□□□ -0.65
VPS4A-204ENST00000566354 PRR14LQ5THK1 2151 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 IQCF6A8MYZ5 107 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 HBZP02008 142 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 LCN2P80188 198 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 P2RY6Q15077 328 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 LHFPL4Q7Z7J7 247 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 DIRC2Q96SL1 478 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 C11orf94C9JXX5 98 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 RBMXL2O75526 392 aaKnown RBP11.01□□□□□ -0.65
VPS4A-204ENST00000566354 TNFSF13O75888 250 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 CELA3BP08861 270 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 CD99P14209 185 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 SELEP16581 610 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 CDC34P49427 236 aaPredicted RBP11.01□□□□□ -0.65
VPS4A-204ENST00000566354 TMEM249Q2WGJ8 235 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 ARSJQ5FYB0 599 aaPredicted RBP11.01□□□□□ -0.65
VPS4A-204ENST00000566354 DOLPP1Q86YN1 238 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 TMEM37Q8WXS4 190 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 ZDHHC16Q969W1 377 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 BTF3L4Q96K17 158 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 FUT9Q9Y231 359 aa11.01□□□□□ -0.65
VPS4A-204ENST00000566354 IGHV3-64DA0A0J9YX35 117 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 PDE6DO43924 150 aa11□□□□□ -0.65
VPS4A-204ENST00000566354 SOX15O60248 233 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms