RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 FOXA2Q9Y261 457 aaPredicted RBP7.63□□□□□ -1.19
CLN3-220ENST00000566040 DMRT1Q9Y5R6 373 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 DNAH9Q9NYC9 4486 aa7.63□□□□□ -1.19
CLN3-220ENST00000566040 A0A1W2PN81 502 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 CCDC160A6NGH7 325 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 BRI3O95415 125 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 RAB3DO95716 219 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 OR9G9P0C7N8 305 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 VDAC1P21796 283 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 F2RP25116 425 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 CHRNA7P36544 502 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 RAB9AP51151 201 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 TAS2R19P59542 299 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 RUNX1Q01196 453 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 KLK9Q2XQG4 91 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 UNQ5815/PRO19632Q6UWF5 114 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 SSX9Q7RTT3 188 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 TBC1D26Q86UD7 250 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 C1QL4Q86Z23 238 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 ZNF695Q8IW36 515 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 KLHL30-AS1Q8NEE0 82 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 LHFPL5Q8TAF8 219 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 MARCH1Q8TCQ1 289 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 TMEM230Q96A57 120 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 DGCR14Q96DF8 476 aaKnown RBP7.62□□□□□ -1.19
CLN3-220ENST00000566040 ZNF414Q96IQ9 312 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 TP53RKQ96S44 253 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 RTBDNQ9BSG5 229 aaPredicted RBP7.62□□□□□ -1.19
CLN3-220ENST00000566040 C5orf66Q9H5L9 145 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 SLC2A8Q9NY64 477 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 BET1LQ9NYM9 111 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 KLK9Q9UKQ9 250 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 VSIG4Q9Y279 399 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 PRELID3BQ9Y3B1 194 aa7.62□□□□□ -1.19
CLN3-220ENST00000566040 A0A0G2JRQ6 117 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 IGLC7A0M8Q6 106 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 FABP12A6NFH5 140 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 HMX3A6NHT5 357 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 UPK2O00526 184 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 OR2A4O95047 310 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 HPRT1P00492 218 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 IGKV1-5P01602 117 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 AREGP15514 252 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 RPA2P15927 270 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 PTBP1P26599 531 aaKnown RBP eCLIP7.61□□□□□ -1.19
CLN3-220ENST00000566040 KIR2DS2P43631 304 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 TAS2R31P59538 309 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 OR2B8PP59922 312 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 SLC35B1P78383 322 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 PLGLAQ15195 96 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 TNXAQ16473 311 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 BAK1Q16611 211 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 VMA21Q3ZAQ7 101 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 OXLD1Q5BKU9 147 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 C15orf40Q8WUR7 153 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 C4orf3Q8WVX3 66 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 SEC22AQ96IW7 307 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 UBE2E2Q96LR5 201 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 OR2A7Q96R45 310 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 PLEKHA2Q9HB19 425 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 ZFP57Q9NU63 452 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 TMEM140Q9NV12 185 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 COMMD9Q9P000 198 aa7.61□□□□□ -1.19
CLN3-220ENST00000566040 TRBV9A0A0B4J1U6 114 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 MSGN1A6NI15 193 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 MARCH11A6NNE9 402 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 TRBV12-3P01733 135 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 PRH1P02810 166 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 AKAIN1P0CW23 69 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 PF4V1P10720 104 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 BTCP35070 178 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 LPAR6P43657 344 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 MFAP2P55001 183 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 TSPAN5P62079 268 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 SUPT4H1P63272 117 aaKnown RBP7.6□□□□□ -1.19
CLN3-220ENST00000566040 CATR1Q13166 79 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 IZUMO4Q1ZYL8 232 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 CXorf66Q5JRM2 361 aaPredicted RBP7.6□□□□□ -1.19
CLN3-220ENST00000566040 KHDC1LQ5JSQ8 128 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 MMD2Q8IY49 270 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 SLC38A6Q8IZM9 456 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 CADM3Q8N126 398 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 TCTEX1D1Q8N7M0 179 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 POC5Q8NA72 575 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 OR5T1Q8NG75 326 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 OR4F17Q8NGA8 305 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 OR51S1Q8NGJ8 323 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 TERB2Q8NHR7 220 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 FANCD2OSQ96PS1 177 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 OR4F4Q96R69 305 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 THAP7Q9BT49 309 aaPredicted RBP7.6□□□□□ -1.19
CLN3-220ENST00000566040 HRASLSQ9HDD0 168 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 AKIP1Q9NQ31 210 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 FAM212BQ9NTI7 297 aaPredicted RBP7.6□□□□□ -1.19
CLN3-220ENST00000566040 RABL2AQ9UBK7 228 aaPredicted RBP7.6□□□□□ -1.19
CLN3-220ENST00000566040 RABL2BQ9UNT1 228 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 GPR132Q9UNW8 380 aa7.6□□□□□ -1.19
CLN3-220ENST00000566040 IGHV4OR15-8A0A075B7B6 117 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 A0A087WW49 117 aa7.59□□□□□ -1.19
CLN3-220ENST00000566040 H0Y980 276 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms