RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RHOVQ96L33 236 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 SCGB3A2Q96PL1 93 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 OR2A7Q96R45 310 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 PHB2Q99623 299 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 HRASLSQ9HDD0 168 aa13.55□□□□□ -0.24
CLN3-217ENST00000565354 S1PR2O95136 353 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 CTSDP07339 412 aaPredicted RBP13.54□□□□□ -0.24
CLN3-217ENST00000565354 LPAR6P43657 344 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 BRWD1-AS2P59051 145 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 RND3P61587 244 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 NDPQ00604 133 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 PJVKQ0ZLH3 352 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 SURF2Q15527 256 aaPredicted RBP13.54□□□□□ -0.24
CLN3-217ENST00000565354 TEX38Q6PEX7 206 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 MMD2Q8IY49 270 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 DEDD2Q8WXF8 326 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 S100ZQ8WXG8 99 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 R3HDM4Q96D70 268 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 CITED2Q99967 270 aaPredicted RBP13.54□□□□□ -0.24
CLN3-217ENST00000565354 FAM103A1Q9BTL3 118 aaKnown RBP13.54□□□□□ -0.24
CLN3-217ENST00000565354 PLEKHA2Q9HB19 425 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 SLC2A8Q9NY64 477 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 COMMD9Q9P000 198 aa13.54□□□□□ -0.24
CLN3-217ENST00000565354 G3V318 75 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 MPPED1O15442 326 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 SERPINE2P07093 398 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 BAK1Q16611 211 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 PRSS8Q16651 343 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 CXorf66Q5JRM2 361 aaPredicted RBP13.53□□□□□ -0.24
CLN3-217ENST00000565354 UNQ5815/PRO19632Q6UWF5 114 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 LINC00299Q6ZSB3 139 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 WIPF2Q8TF74 440 aaPredicted RBP13.53□□□□□ -0.24
CLN3-217ENST00000565354 ZNF580Q9UK33 172 aa13.53□□□□□ -0.24
CLN3-217ENST00000565354 TEX13DA0A0J9YY54 714 aaPredicted RBP13.52□□□□□ -0.25
CLN3-217ENST00000565354 LINC00854A0A1B0GVQ3 168 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 A0A1W2PN81 502 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 A0A1W2PRX2 142 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 CENPXA8MT69 81 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 KBTBD11O94819 623 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 RPA2P15927 270 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 CHRNA7P36544 502 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 TMEM65Q6PI78 240 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 NDUFA11Q86Y39 141 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 LFNGQ8NES3 379 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 OR4A5Q8NH83 315 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 ZNF430Q9H8G1 570 aaPredicted RBP13.52□□□□□ -0.25
CLN3-217ENST00000565354 FBXO7Q9Y3I1 522 aa13.52□□□□□ -0.25
CLN3-217ENST00000565354 TSSC4Q9Y5U2 329 aaPredicted RBP13.52□□□□□ -0.25
CLN3-217ENST00000565354 ARPC1BO15143 372 aaKnown RBP13.51□□□□□ -0.25
CLN3-217ENST00000565354 CD40LGP29965 261 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 CD83Q01151 205 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 OXLD1Q5BKU9 147 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 OR4A47Q6IF82 309 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 PUSL1Q8N0Z8 303 aaKnown RBP13.51□□□□□ -0.25
CLN3-217ENST00000565354 TMEM167AQ8TBQ9 72 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 AKIP1Q9NQ31 210 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 FAM212BQ9NTI7 297 aaPredicted RBP13.51□□□□□ -0.25
CLN3-217ENST00000565354 TMEM140Q9NV12 185 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 AURKAIP1Q9NWT8 199 aaPredicted RBP13.51□□□□□ -0.25
CLN3-217ENST00000565354 BET1LQ9NYM9 111 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 GPR132Q9UNW8 380 aa13.51□□□□□ -0.25
CLN3-217ENST00000565354 C3orf85A0A1B0GTC6 90 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 NAP1L6A6NFF2 107 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 MARCH11A6NNE9 402 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 NUDT19A8MXV4 375 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 H0Y980 276 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 KRASP01116 189 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 ELANEP08246 267 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 PF4V1P10720 104 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 IL7P13232 177 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 CRIP2P52943 208 aaPredicted RBP13.5□□□□□ -0.25
CLN3-217ENST00000565354 FOXE3Q13461 319 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 TRIM16LQ309B1 348 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 SRSF12Q8WXF0 261 aaKnown RBP13.5□□□□□ -0.25
CLN3-217ENST00000565354 MRGPRFQ96AM1 343 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 SDHCQ99643 169 aaPredicted RBP13.5□□□□□ -0.25
CLN3-217ENST00000565354 ZNF355PQ9NSJ1 428 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 FOXA2Q9Y261 457 aaPredicted RBP13.5□□□□□ -0.25
CLN3-217ENST00000565354 NUBP2Q9Y5Y2 271 aa13.5□□□□□ -0.25
CLN3-217ENST00000565354 SNAPC5O75971 98 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 ATG12O94817 140 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 IGHG4P01861 327 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 MAS1LP35410 378 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 G6PCP35575 357 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 RPL27AP46776 148 aaKnown RBP13.49□□□□□ -0.25
CLN3-217ENST00000565354 RPL8P62917 257 aaKnown RBP13.49□□□□□ -0.25
CLN3-217ENST00000565354 CFHR3Q02985 330 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 POU2AF1Q16633 256 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 ZNF585BQ52M93 769 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 AKIRIN2Q53H80 203 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 TCTEX1D4Q5JR98 221 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 SGPP2Q8IWX5 399 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 TMEM68Q96MH6 324 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 RTBDNQ9BSG5 229 aaPredicted RBP13.49□□□□□ -0.25
CLN3-217ENST00000565354 WDR12Q9GZL7 423 aaKnown RBP13.49□□□□□ -0.25
CLN3-217ENST00000565354 C5orf66Q9H5L9 145 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 NAA60Q9H7X0 242 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 ZFP57Q9NU63 452 aa13.49□□□□□ -0.25
CLN3-217ENST00000565354 MSGN1A6NI15 193 aa13.48□□□□□ -0.25
CLN3-217ENST00000565354 B3GALNT1O75752 331 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms