RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 RCHY1Q96PM5 261 aa17.14■□□□□ 0.33
CLN3-215ENST00000565236 FYTTD1Q96QD9 318 aaKnown RBP17.14■□□□□ 0.33
CLN3-215ENST00000565236 AIFM2Q9BRQ8 373 aa17.14■□□□□ 0.33
CLN3-215ENST00000565236 SLC5A7Q9GZV3 580 aa17.14■□□□□ 0.33
CLN3-215ENST00000565236 VCX3AQ9NNX9 186 aa17.14■□□□□ 0.33
CLN3-215ENST00000565236 ZNF257Q9Y2Q1 563 aa17.14■□□□□ 0.33
CLN3-215ENST00000565236 HUWE1Q7Z6Z7 4374 aaKnown RBP17.14■□□□□ 0.33
CLN3-215ENST00000565236 XRCC3O43542 346 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 AIREO43918 545 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 CSN3P07498 182 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 SGPP2Q8IWX5 399 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 OR5AP2Q8NGF4 316 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 ZMAT4Q9H898 229 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 SIGLEC8Q9NYZ4 499 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 PEMTQ9UBM1 199 aa17.13■□□□□ 0.33
CLN3-215ENST00000565236 TEX22C9J3V5 150 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 OR2J3O76001 311 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 IL6RP08887 468 aaPredicted RBP17.12■□□□□ 0.33
CLN3-215ENST00000565236 IGHV4-30-4P0DP06 118 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 TGFBR1P36897 503 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 RPS19P39019 145 aaKnown RBP17.12■□□□□ 0.33
CLN3-215ENST00000565236 FXYD4P59646 89 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 C15orf32Q32M92 178 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 SPAG16Q8N0X2 631 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 GIMAP1Q8WWP7 306 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 IFT46Q9NQC8 304 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 SLC2A9Q9NRM0 540 aa17.12■□□□□ 0.33
CLN3-215ENST00000565236 A0A087WXM4 84 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.11■□□□□ 0.33
CLN3-215ENST00000565236 MEIS3P1A6NDR6 274 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 E7EUB6 86 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 BMPR1BO00238 502 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 SULT1C2O00338 296 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 RPL8P62917 257 aaKnown RBP17.11■□□□□ 0.33
CLN3-215ENST00000565236 FAM209BQ5JX69 171 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 UBE2NLQ5JXB2 153 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 LCN12Q6JVE5 192 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 TSPAN14Q8NG11 270 aa17.11■□□□□ 0.33
CLN3-215ENST00000565236 NPIPB5A8MRT5 1133 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 DHFRP00374 187 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 ZNF735P0CB33 412 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 LSM3P62310 102 aaKnown RBP17.1■□□□□ 0.33
CLN3-215ENST00000565236 CATR1Q13166 79 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 SAMD12Q8N8I0 201 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 YIPF6Q96EC8 236 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 HRASLSQ9HDD0 168 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 FBXL7Q9UJT9 491 aa17.1■□□□□ 0.33
CLN3-215ENST00000565236 C3orf84H3BNL1 204 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 RBFOX2O43251 390 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLN3-215ENST00000565236 HLA-GP17693 338 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 HERV-K104P61576 105 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 OR4A47Q6IF82 309 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 TMEM17Q86X19 198 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 Q8N402 240 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 OR4A5Q8NH83 315 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 KCTD12Q96CX2 325 aaKnown RBP17.09■□□□□ 0.33
CLN3-215ENST00000565236 BET1LQ9NYM9 111 aa17.09■□□□□ 0.33
CLN3-215ENST00000565236 A8MZ25 164 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 TNFAIP8O95379 198 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 HPRT1P00492 218 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 PSMB6P28072 239 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 TAS2R31P59538 309 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 TMEM69Q5SWH9 247 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 ZNF818PQ6ZRF7 136 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 C19orf35Q6ZS72 473 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 GTSCR1Q86UQ5 136 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 BORCS5Q969J3 196 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 C19orf73Q9NVV2 129 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 EHFQ9NZC4 300 aa17.08■□□□□ 0.32
CLN3-215ENST00000565236 A0A1B0GW64 132 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 PPP5D1E7EU14 171 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 CRYGCP07315 174 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 DEFA4P12838 97 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 AREGP15514 252 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 NQO2P16083 231 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 OR51H1Q8NH63 302 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 CD300LFQ8TDQ1 290 aa17.07■□□□□ 0.32
CLN3-215ENST00000565236 IZUMO1RA6ND01 250 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 GGCTO75223 188 aaKnown RBP17.06■□□□□ 0.32
CLN3-215ENST00000565236 MYOD1P15172 320 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 RFX2P48378 723 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 MECP2P51608 486 aaKnown RBP17.06■□□□□ 0.32
CLN3-215ENST00000565236 TAS2R20P59543 309 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 AADACL3Q5VUY0 350 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 DHRS11Q6UWP2 260 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 OR2K2Q8NGT1 345 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 FANCD2OSQ96PS1 177 aa17.06■□□□□ 0.32
CLN3-215ENST00000565236 NDUFB8O95169 186 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 OR2C1O95371 312 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 HLA-AP01891 365 aaKnown RBP17.05■□□□□ 0.32
CLN3-215ENST00000565236 HIST1H1BP16401 226 aaKnown RBP17.05■□□□□ 0.32
CLN3-215ENST00000565236 CTRB1P17538 263 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 GNRHRP30968 328 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 CTRB2Q6GPI1 263 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 DMBX1Q8NFW5 382 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 TM2D3Q9BRN9 247 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 ZNF2Q9BSG1 426 aaPredicted RBP17.05■□□□□ 0.32
CLN3-215ENST00000565236 COMMD5Q9GZQ3 224 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 TUBA4BQ9H853 241 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 PLEKHA2Q9HB19 425 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms