RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FANCD2OSQ96PS1 177 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 TECRQ9NZ01 308 aaKnown RBP12.67□□□□□ -0.38
CLN3-211ENST00000564091 SPATA2Q9UM82 520 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 ZNF257Q9Y2Q1 563 aa12.67□□□□□ -0.38
CLN3-211ENST00000564091 A0A1B0GW64 132 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 ZNF320A2RRD8 509 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 DPPA5A6NC42 116 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 LGALS9O00182 355 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 CD36P16671 472 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 CBLN1P23435 193 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 RPL27AP46776 148 aaKnown RBP12.66□□□□□ -0.38
CLN3-211ENST00000564091 CCDC140Q96MF4 163 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 OR2A7Q96R45 310 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 GPHA2Q96T91 129 aa12.66□□□□□ -0.38
CLN3-211ENST00000564091 MRPS7Q9Y2R9 242 aaKnown RBP12.66□□□□□ -0.38
CLN3-211ENST00000564091 TRDV1A0A1B0GX56 115 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 NPIPB5A8MRT5 1133 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 KBTBD11O94819 623 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 CTXN2P0C2S0 81 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 MYOD1P15172 320 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 AREGP15514 252 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 ARL3P36405 182 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 BRWD1-AS2P59051 145 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 FAM209BQ5JX69 171 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 HACD4Q5VWC8 232 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 C22orf42Q6IC83 251 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 ZNF367Q7RTV3 350 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 SLC16A13Q7RTY0 426 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 GPHB5Q86YW7 130 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 TMEM61Q8N0U2 210 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 TMEM167AQ8TBQ9 72 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 NUDCD2Q8WVJ2 157 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 TCTEX1D2Q8WW35 142 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 SLC2A9Q9NRM0 540 aa12.65□□□□□ -0.38
CLN3-211ENST00000564091 TMEM213A2RRL7 107 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 ERICH4A6NGS2 130 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 ZNF735P0CB33 412 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 EIF4EBP1Q13541 118 aaPredicted RBP12.64□□□□□ -0.39
CLN3-211ENST00000564091 ARL6IP1Q15041 203 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 TBCEQ15813 527 aaPredicted RBP12.64□□□□□ -0.39
CLN3-211ENST00000564091 ZNF57Q68EA5 555 aaPredicted RBP12.64□□□□□ -0.39
CLN3-211ENST00000564091 SSX9Q7RTT3 188 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 PUSL1Q8N0Z8 303 aaKnown RBP12.64□□□□□ -0.39
CLN3-211ENST00000564091 UXS1Q8NBZ7 420 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 OR4S2Q8NH73 311 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 NDUFB11Q9NX14 153 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 TAS2R8Q9NYW2 309 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 MLXQ9UH92 298 aa12.64□□□□□ -0.39
CLN3-211ENST00000564091 TMEM235A6NFC5 223 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 SLC22A5O76082 557 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 SCAF4O95104 1147 aaKnown RBP12.63□□□□□ -0.39
CLN3-211ENST00000564091 REG1AP05451 166 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 CRYGCP07315 174 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 PSMB6P28072 239 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 FAM106AQ4KMX7 169 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 CNIH2Q6PI25 160 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 MFSD4AQ8N468 514 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 VSTM2AQ8TAG5 236 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 HSD17B10Q99714 261 aaKnown RBP12.63□□□□□ -0.39
CLN3-211ENST00000564091 DCSTAMPQ9H295 470 aa12.63□□□□□ -0.39
CLN3-211ENST00000564091 SSX5O60225 188 aa12.62□□□□□ -0.39
CLN3-211ENST00000564091 CTRB1P17538 263 aa12.62□□□□□ -0.39
CLN3-211ENST00000564091 TM4SF20Q53R12 229 aa12.62□□□□□ -0.39
CLN3-211ENST00000564091 CTRB2Q6GPI1 263 aa12.62□□□□□ -0.39
CLN3-211ENST00000564091 OR52B4Q8NGK2 314 aa12.62□□□□□ -0.39
CLN3-211ENST00000564091 EEF1AKMT3Q96AZ1 226 aa12.62□□□□□ -0.39
CLN3-211ENST00000564091 OVOL2Q9BRP0 275 aa12.62□□□□□ -0.39
CLN3-211ENST00000564091 MFSD2BA6NFX1 497 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 CGB1A6NKQ9 187 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 TNFSF12O43508 249 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 CLEC3BP05452 202 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 MAS1LP35410 378 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 GNG2P59768 71 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 RPL8P62917 257 aaKnown RBP12.61□□□□□ -0.39
CLN3-211ENST00000564091 BTNL8Q6UX41 500 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 UNQ9165/PRO28630Q6UXU0 137 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 CNBD2Q96M20 576 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 GGTLC1Q9BX51 225 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 ANXA10Q9UJ72 324 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 KMT2AQ03164 3969 aa12.61□□□□□ -0.39
CLN3-211ENST00000564091 LOC102724200A0A096LPH7 203 aaPredicted RBP12.6□□□□□ -0.39
CLN3-211ENST00000564091 NOTOA8MTQ0 251 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 A8MWP6 167 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 DHFRP00374 187 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 HRASP01112 189 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 PTHLHP12272 177 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 DEFA4P12838 97 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 HLA-GP17693 338 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 KLK9Q2XQG4 91 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 ZNF66Q6ZN08 573 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 CCL28Q9NRJ3 127 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 KLK9Q9UKQ9 250 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 FRAS1Q86XX4 4008 aa12.6□□□□□ -0.39
CLN3-211ENST00000564091 IGLV11-55A0A075B6I3 123 aa12.59□□□□□ -0.39
CLN3-211ENST00000564091 IGHV3-35A0A0C4DH35 117 aa12.59□□□□□ -0.39
CLN3-211ENST00000564091 HIST1H1BP16401 226 aaKnown RBP12.59□□□□□ -0.39
CLN3-211ENST00000564091 PMS2P11Q13670 270 aa12.59□□□□□ -0.39
CLN3-211ENST00000564091 ZNF585BQ52M93 769 aa12.59□□□□□ -0.39
CLN3-211ENST00000564091 OR4A47Q6IF82 309 aa12.59□□□□□ -0.39
CLN3-211ENST00000564091 DAPK2Q9UIK4 370 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms