RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 OPN1MW2P0DN77 364 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 OPN1MW3P0DN78 364 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 C4BPBP20851 252 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 LGALS7P47929 136 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 FXYD4P59646 89 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 HERV-K104P61576 105 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 SLC35B1P78383 322 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 CX3CL1P78423 397 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 PLGLAQ15195 96 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 NSUN5P1Q3KNT7 163 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 C4orf46Q504U0 113 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 ZNF66Q6ZN08 573 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 NOXA1Q86UR1 476 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 COMMD1Q8N668 190 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 ZBTB34Q8NCN2 500 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 FAM110DQ8TAY7 271 aaPredicted RBP7.35□□□□□ -1.23
LDLR-211ENST00000560173 ZFAND1Q8TCF1 268 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 ZNF431Q8TF32 576 aaPredicted RBP7.35□□□□□ -1.23
LDLR-211ENST00000560173 MOB3AQ96BX8 217 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 HYLS1Q96M11 299 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 ZNF2Q9BSG1 426 aaPredicted RBP7.35□□□□□ -1.23
LDLR-211ENST00000560173 GON7Q9BXV9 100 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 SLC5A7Q9GZV3 580 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 FXYD6Q9H0Q3 95 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 PARP11Q9NR21 331 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 TPSG1Q9NRR2 321 aa7.35□□□□□ -1.23
LDLR-211ENST00000560173 TSSC4Q9Y5U2 329 aaPredicted RBP7.35□□□□□ -1.23
LDLR-211ENST00000560173 A0A1W2PRX2 142 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 SRRM4A7MD48 611 aaKnown RBP7.34□□□□□ -1.23
LDLR-211ENST00000560173 SHOXO15266 292 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 FCGR3BO75015 233 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 CA2P00918 260 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 IGHG4P01861 327 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 CRYGBP07316 175 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 GIPP09681 153 aaPredicted RBP7.34□□□□□ -1.23
LDLR-211ENST00000560173 OR4E1P0C645 316 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 VDAC1P21796 283 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 CRIP2P52943 208 aaPredicted RBP7.34□□□□□ -1.23
LDLR-211ENST00000560173 BRWD1-AS2P59051 145 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 RAP2BP61225 183 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 SSBP2P81877 361 aaPredicted RBP7.34□□□□□ -1.23
LDLR-211ENST00000560173 FOXE3Q13461 319 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 C19orf54Q5BKX5 351 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 OR2B11Q5JQS5 317 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 KHDC1LQ5JSQ8 128 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 FAAP20Q6NZ36 180 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 TEX38Q6PEX7 206 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 ZNF818PQ6ZRF7 136 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 SLC25A42Q86VD7 318 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 RNF152Q8N8N0 203 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 OR4D10Q8NGI6 311 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 OSR1Q8TAX0 266 aaPredicted RBP7.34□□□□□ -1.23
LDLR-211ENST00000560173 TCTEX1D2Q8WW35 142 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 GPHA2Q96T91 129 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 PHB2Q99623 299 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 RANGRFQ9HD47 186 aaPredicted RBP7.34□□□□□ -1.23
LDLR-211ENST00000560173 FLVCR2Q9UPI3 526 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 C14orf166Q9Y224 244 aaKnown RBP7.34□□□□□ -1.23
LDLR-211ENST00000560173 PRELID3BQ9Y3B1 194 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 FBXO7Q9Y3I1 522 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 WSB1Q9Y6I7 421 aa7.34□□□□□ -1.23
LDLR-211ENST00000560173 TRAV41A0A0B4J266 112 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 A0A0B4J2A0 478 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 G3V318 75 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 TNFSF12O43508 249 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 ELANEP08246 267 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 EGR2P11161 476 aaPredicted RBP7.33□□□□□ -1.24
LDLR-211ENST00000560173 ANXA7P20073 488 aaKnown RBP7.33□□□□□ -1.24
LDLR-211ENST00000560173 PPIFP30405 207 aaKnown RBP7.33□□□□□ -1.24
LDLR-211ENST00000560173 GNRHRP30968 328 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 KIR2DS2P43631 304 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 UBE2KP61086 200 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 RPL23AP62750 156 aaKnown RBP7.33□□□□□ -1.24
LDLR-211ENST00000560173 PJVKQ0ZLH3 352 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 FCN2Q15485 313 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 MRGPRG-AS1Q2M3A8 158 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 VMA21Q3ZAQ7 101 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 TMEM128Q5BJH2 165 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 ZNF562Q6V9R5 426 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 TMED4Q7Z7H5 227 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 PPP1R27Q86WC6 154 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 C12orf45Q8N5I9 185 aaPredicted RBP7.33□□□□□ -1.24
LDLR-211ENST00000560173 OR4F17Q8NGA8 305 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 OR13C8Q8NGS7 320 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 OR4S2Q8NH73 311 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 ARPC1AQ92747 370 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 R3HDM4Q96D70 268 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 OR4F4Q96R69 305 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 CLCC1Q96S66 551 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 ZNF436Q9C0F3 470 aaPredicted RBP7.33□□□□□ -1.24
LDLR-211ENST00000560173 SHPKQ9UHJ6 478 aa7.33□□□□□ -1.24
LDLR-211ENST00000560173 RBFOX2O43251 390 aaKnown RBP eCLIP7.32□□□□□ -1.24
LDLR-211ENST00000560173 DUS4LO95620 317 aaKnown RBP7.32□□□□□ -1.24
LDLR-211ENST00000560173 IGLV1-40P01703 118 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 RPLP1P05386 114 aaKnown RBP7.32□□□□□ -1.24
LDLR-211ENST00000560173 SAA1P0DJI8 122 aaPredicted RBP7.32□□□□□ -1.24
LDLR-211ENST00000560173 PSMB8P28062 276 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 S100GP29377 79 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 UCP3P55916 312 aa7.32□□□□□ -1.24
LDLR-211ENST00000560173 CYCSP99999 105 aaKnown RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms