RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 C1orf159Q96HA4 380 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 CIB3Q96Q77 187 aaPredicted RBP10.65□□□□□ -0.7
LDLR-207ENST00000558013 WDR83OSQ9Y284 106 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 PPP5D1E7EU14 171 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 AMBPP02760 352 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 OR4A16Q8NH70 328 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 IFI27L2Q9H2X8 130 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 PLSCR4Q9NRQ2 329 aa10.65□□□□□ -0.7
LDLR-207ENST00000558013 LRBAP50851 2863 aa10.65□□□□□ -0.71
LDLR-207ENST00000558013 YLPM1P49750 1951 aaKnown RBP10.65□□□□□ -0.71
LDLR-207ENST00000558013 XKRY2A2RUG3 117 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 ZNF729A6NN14 1252 aaPredicted RBP10.64□□□□□ -0.71
LDLR-207ENST00000558013 PRR33A8MZF0 331 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 M0R1B8 84 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 MBP02144 154 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 ARL14EPLP0DKL9 152 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 PMS2P11Q13670 270 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 SPATA31B1PQ5VZV4 182 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 MGST2Q99735 147 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 PYGO2Q9BRQ0 406 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 WASF3Q9UPY6 502 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 ELOA3CA0A087WX78 387 aaPredicted RBP10.64□□□□□ -0.71
LDLR-207ENST00000558013 SRRM5B3KS81 715 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 OR5B12Q96R08 314 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 DCAF16Q9NXF7 216 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 ACACAQ13085 2346 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 A0A0U1RQK1 487 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 RBFOX2O43251 390 aaKnown RBP eCLIP10.64□□□□□ -0.71
LDLR-207ENST00000558013 GFRA3O60609 400 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 CGAP01215 116 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 GPX4P36969 197 aaPredicted RBP10.64□□□□□ -0.71
LDLR-207ENST00000558013 HTD2P86397 168 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 RELBQ01201 579 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 FAM78BQ5VT40 261 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 BHLHA15Q7RTS1 189 aaPredicted RBP10.64□□□□□ -0.71
LDLR-207ENST00000558013 LINC01551Q86U37 167 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 LOXL4Q96JB6 756 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 HINT2Q9BX68 163 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 MANBALQ9NQG1 85 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 TMEM140Q9NV12 185 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 PITPNC1Q9UKF7 332 aa10.64□□□□□ -0.71
LDLR-207ENST00000558013 POLEQ07864 2286 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 CEP295Q9C0D2 2601 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 A0A1W2PPV4 95 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 HRASP01112 189 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 ADH4P08319 380 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 VDAC2P45880 294 aaPredicted RBP10.63□□□□□ -0.71
LDLR-207ENST00000558013 ACOT6Q3I5F7 207 aaPredicted RBP10.63□□□□□ -0.71
LDLR-207ENST00000558013 MBNL2Q5VZF2 373 aaKnown RBP10.63□□□□□ -0.71
LDLR-207ENST00000558013 MOB3BQ86TA1 216 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 SEPSECSQ9HD40 501 aaKnown RBP10.63□□□□□ -0.71
LDLR-207ENST00000558013 ASCL3Q9NQ33 180 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 SLC25A15Q9Y619 301 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 TPRP12270 2363 aaKnown RBP10.63□□□□□ -0.71
LDLR-207ENST00000558013 FOXH1O75593 365 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 HPRT1P00492 218 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 CT45A1Q5HYN5 189 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 ZNF474Q6S9Z5 364 aaPredicted RBP10.63□□□□□ -0.71
LDLR-207ENST00000558013 CT45A3Q8NHU0 189 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 ITLN1Q8WWA0 313 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 PROCRQ9UNN8 238 aa10.63□□□□□ -0.71
LDLR-207ENST00000558013 C17orf112F2Z3M2 114 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 MMP23AO75900 390 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 FTH1P19P0C7X4 201 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 TMEM183AQ8IXX5 376 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 OR2T10Q8NGZ9 312 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 OR1P1Q8NH06 330 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 SARAFQ96BY9 339 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 ZZEF1O43149 2961 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 TRAV17A0A0B4J275 112 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 AHRRA9YTQ3 701 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 PRSS46E5RG02 174 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 THBS3P49746 956 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 GNG10P50151 68 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 NUBP1P53384 320 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 TCF23Q7RTU1 214 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 S1PR3Q99500 378 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 GGTLC1Q9BX51 225 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 PARD6AQ9NPB6 346 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 CALYQ9NYX4 217 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 PXMP4Q9Y6I8 212 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 DCHS2Q6V1P9 2916 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 SCO2A0A1W2PP80 73 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 SPCS3P61009 180 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 ARSJQ5FYB0 599 aaPredicted RBP10.62□□□□□ -0.71
LDLR-207ENST00000558013 C14orf144Q96I85 54 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 TCF19Q9Y242 345 aa10.62□□□□□ -0.71
LDLR-207ENST00000558013 SAA2-SAA4A0A096LPE2 208 aa10.61□□□□□ -0.71
LDLR-207ENST00000558013 MGST3O14880 152 aa10.61□□□□□ -0.71
LDLR-207ENST00000558013 SAA2P0DJI9 122 aaPredicted RBP10.61□□□□□ -0.71
LDLR-207ENST00000558013 GZMBP10144 247 aa10.61□□□□□ -0.71
LDLR-207ENST00000558013 C17orf58Q2M2W7 97 aa10.61□□□□□ -0.71
LDLR-207ENST00000558013 SVEP1Q4LDE5 3571 aa10.61□□□□□ -0.71
LDLR-207ENST00000558013 PDLIM3Q53GG5 364 aaPredicted RBP10.61□□□□□ -0.71
LDLR-207ENST00000558013 ZCCHC24Q8N2G6 241 aaKnown RBP10.61□□□□□ -0.71
LDLR-207ENST00000558013 C1orf162Q8NEQ5 155 aaPredicted RBP10.61□□□□□ -0.71
LDLR-207ENST00000558013 ZMAT5Q9UDW3 170 aaKnown RBP10.61□□□□□ -0.71
LDLR-207ENST00000558013 YTHDF2Q9Y5A9 579 aaKnown RBP10.61□□□□□ -0.71
LDLR-207ENST00000558013 ZNF891A8MT65 544 aaPredicted RBP10.61□□□□□ -0.71
LDLR-207ENST00000558013 IL3RAP26951 378 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms