RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NDUFS7O75251 213 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 RELBQ01201 579 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 TLE4Q04727 773 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 LFNGQ8NES3 379 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 OR13D1Q8NGV5 346 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 CHODLQ9H9P2 273 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 PLA2G2EQ9NZK7 142 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 PRNDQ9UKY0 176 aa13.76□□□□□ -0.21
LDLR-206ENST00000557958 C15orf61A6NNL5 157 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 AVPI1Q5T686 147 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 OR8G2PQ6IF36 304 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 OR4A47Q6IF82 309 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 ZNF841Q6ZN19 808 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 VKORC1L1Q8N0U8 176 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 ABHD12Q8N2K0 398 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 OSR1Q8TAX0 266 aaPredicted RBP13.75□□□□□ -0.21
LDLR-206ENST00000557958 FAM213BQ8TBF2 198 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 ZDHHC16Q969W1 377 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 PSMG3Q9BT73 122 aaPredicted RBP13.75□□□□□ -0.21
LDLR-206ENST00000557958 TMEM133Q9H2Q1 129 aa13.75□□□□□ -0.21
LDLR-206ENST00000557958 FOXA2Q9Y261 457 aaPredicted RBP13.75□□□□□ -0.21
LDLR-206ENST00000557958 USP9XQ93008 2570 aaPredicted RBP13.75□□□□□ -0.21
LDLR-206ENST00000557958 ZNF137PP52743 207 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 THNSL2Q86YJ6 484 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 C8orf46Q8TAG6 207 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 OR4C12Q96R67 309 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 TMEM147Q9BVK8 224 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 SEC11CQ9BY50 192 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 DOPEY1Q5JWR5 2465 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 SPTAN1Q13813 2472 aaKnown RBP13.74□□□□□ -0.21
LDLR-206ENST00000557958 H7C2Y5 167 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 GOSR1O95249 250 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 RAB13P51153 203 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 PRRX1P54821 245 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 ERVFRD-1P60508 538 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 LRRC75BQ2VPJ9 315 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 HAPLN4Q86UW8 402 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 CCL19Q99731 98 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 PCGF1Q9BSM1 259 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 MRPL20Q9BYC9 149 aaKnown RBP13.74□□□□□ -0.21
LDLR-206ENST00000557958 TREM1Q9NP99 234 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 ENY2Q9NPA8 101 aa13.74□□□□□ -0.21
LDLR-206ENST00000557958 HEYLQ9NQ87 328 aaPredicted RBP13.74□□□□□ -0.21
LDLR-206ENST00000557958 UBR5O95071 2799 aaPredicted RBP13.73□□□□□ -0.21
LDLR-206ENST00000557958 PPIAL4CA0A0B4J2A2 164 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 SNAPINO95295 136 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 PPIAL4GP0DN37 164 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 HOXA1P49639 335 aaPredicted RBP13.73□□□□□ -0.21
LDLR-206ENST00000557958 RAB2AP61019 212 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 SERF2P84101 59 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 RUNX1Q01196 453 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 ARL16Q0P5N6 197 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 GUCA2BQ16661 112 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 WDR25Q64LD2 544 aaPredicted RBP13.73□□□□□ -0.21
LDLR-206ENST00000557958 PDPNQ86YL7 162 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 OR5AN1Q8NGI8 311 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 TMEM14BQ9NUH8 114 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 UQCC1Q9NVA1 299 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 FKBP11Q9NYL4 201 aa13.73□□□□□ -0.21
LDLR-206ENST00000557958 HRNRQ86YZ3 2850 aaPredicted RBP13.73□□□□□ -0.21
LDLR-206ENST00000557958 BTBD17A6NE02 478 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 F8W036 122 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 IFNA10P01566 189 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 GNB2P62879 340 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 TGIF2LXQ8IUE1 241 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 NRGNQ92686 78 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 PBDC1Q9BVG4 233 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 WDR61Q9GZS3 305 aaKnown RBP13.72□□□□□ -0.21
LDLR-206ENST00000557958 TCF19Q9Y242 345 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 ZNF257Q9Y2Q1 563 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 YLPM1P49750 1951 aaKnown RBP13.72□□□□□ -0.21
LDLR-206ENST00000557958 UBE2L5PA0A1B0GUS4 154 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 H0YJW9 148 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 ARG1P05089 322 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 LIPFP07098 398 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 MC5RP33032 325 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 DVL1P1P54792 670 aaPredicted RBP13.72□□□□□ -0.21
LDLR-206ENST00000557958 HSPE1P61604 102 aaKnown RBP13.72□□□□□ -0.21
LDLR-206ENST00000557958 SPINK9Q5DT21 86 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 LINC00518Q8N0U6 118 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 OR4C13Q8NGP0 309 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 VSTM2AQ8TAG5 236 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 FLYWCH2Q96CP2 140 aaKnown RBP13.72□□□□□ -0.21
LDLR-206ENST00000557958 BET1LQ9NYM9 111 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 ZNRD1Q9P1U0 126 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 TIMM9Q9Y5J7 89 aa13.72□□□□□ -0.21
LDLR-206ENST00000557958 IGKV1-16P04430 117 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 FHITP49789 147 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 RAB11AP62491 216 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 TAF15Q92804 592 aaKnown RBP eCLIP13.71□□□□□ -0.21
LDLR-206ENST00000557958 LHX4Q969G2 390 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 HARBI1Q96MB7 349 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 CLEC7AQ9BXN2 247 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 WASHC3Q9Y3C0 194 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 FBXO7Q9Y3I1 522 aa13.71□□□□□ -0.21
LDLR-206ENST00000557958 AMMECR1Q9Y4X0 333 aaPredicted RBP13.71□□□□□ -0.21
LDLR-206ENST00000557958 IGHV2-26A0A0B4J1V2 119 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 AGPAT2O15120 278 aa13.7□□□□□ -0.22
LDLR-206ENST00000557958 F12P00748 615 aaPredicted RBP13.7□□□□□ -0.22
LDLR-206ENST00000557958 HBE1P02100 147 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms