RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 RRHO14718 337 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 WT1P19544 449 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-222ENST00000555774 PLA2G5P39877 138 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 ZNF134P52741 427 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 RTP5Q14D33 572 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 LRP11Q86VZ4 500 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 ZADH2Q8N4Q0 377 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 PCGF1Q9BSM1 259 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 MS4A5Q9H3V2 200 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 NPVFQ9HCQ7 196 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 ZMAT5Q9UDW3 170 aaKnown RBP11.14□□□□□ -0.63
SHMT2-222ENST00000555774 LSM4Q9Y4Z0 139 aaKnown RBP11.14□□□□□ -0.63
SHMT2-222ENST00000555774 PTPRBP23467 1997 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 CACNA1GO43497 2377 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 IGHV3OR15-7A0A075B7D8 119 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 A0A1W2PPQ1 181 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 FNDC10F2Z333 226 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 M0R1B8 84 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 ZNF83P51522 516 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 C17orf58Q2M2W7 97 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 DEFB124Q8NES8 71 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 SDSLQ96GA7 329 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 TMEM204Q9BSN7 226 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 ELOVL1Q9BW60 279 aa11.14□□□□□ -0.63
SHMT2-222ENST00000555774 KBTBD11-OT1A0A1B0GTJ5 212 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 ATP5G3P48201 142 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 POU2AF1Q16633 256 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 DEFB109BQ30KR1 87 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 GCSAMLQ5JQS6 135 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 CST9LP1Q5W188 147 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 ZNRF1Q8ND25 227 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 HSPE1P61604 102 aaKnown RBP11.13□□□□□ -0.63
SHMT2-222ENST00000555774 SFXN3Q9BWM7 321 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 FAM234AQ9H0X4 552 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 ENY2Q9NPA8 101 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 TMEM14BQ9NUH8 114 aa11.13□□□□□ -0.63
SHMT2-222ENST00000555774 TRGV10A0A0A0MS01 117 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 XKRY2A2RUG3 117 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 SLC31A2O15432 143 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 MT-CO2P00403 227 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 DEFA4P12838 97 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 PKIAP61925 76 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 FOXL1Q12952 345 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 RAB31Q13636 194 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 JOSD1Q15040 202 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-222ENST00000555774 CDPF1Q6NVV7 123 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 VKORC1L1Q8N0U8 176 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 SLC24A4Q8NFF2 622 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 ITLN1Q8WWA0 313 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 CORO2AQ92828 525 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 PLPPR2Q96GM1 343 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 PATZ1Q9HBE1 687 aaKnown RBP11.12□□□□□ -0.63
SHMT2-222ENST00000555774 RNF7Q9UBF6 113 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 TRBV23-1A0A0A0MS06 115 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 TRAV3A0A0B4J244 114 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 NDUFB4O95168 129 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 ARL14EPLP0DKL9 152 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 NPY1RP25929 384 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 UBE2G2P60604 165 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 CT45A1Q5HYN5 189 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 MIC13Q5XKP0 118 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 ZNF474Q6S9Z5 364 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-222ENST00000555774 TEPPQ6URK8 271 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 IGFL3Q6UXB1 125 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 TMEM144Q7Z5S9 345 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 ABHD12Q8N2K0 398 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 CT45A3Q8NHU0 189 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 LINC00574Q9H8X3 128 aa11.12□□□□□ -0.63
SHMT2-222ENST00000555774 KNTC1P50748 2209 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 SAA2-SAA4A0A096LPE2 208 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 SPAARA0A1B0GVQ0 90 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 SPRY3O43610 288 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 AMBPP02760 352 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 IL6RP08887 468 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-222ENST00000555774 SAA2P0DJI9 122 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-222ENST00000555774 RPL29P47914 159 aaKnown RBP11.11□□□□□ -0.63
SHMT2-222ENST00000555774 NUBP1P53384 320 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 ATP5IP56385 69 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-222ENST00000555774 SELENOVP59797 346 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 RHOBP62745 196 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 DEFA6Q01524 100 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 STUMQ69YW2 141 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 OR4A47Q6IF82 309 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 ZNF439Q8NDP4 499 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 PRNDQ9UKY0 176 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 ARL2-SNX15V9GYD0 113 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 GTF3C1Q12789 2109 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 FAM186AA6NE01 2351 aa11.11□□□□□ -0.63
SHMT2-222ENST00000555774 TSTD3H0UI37 97 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 TM4SF5O14894 197 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 MRPS11P82912 194 aaKnown RBP11.1□□□□□ -0.63
SHMT2-222ENST00000555774 SPRNQ5BIV9 151 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 C9orf152Q5JTZ5 239 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 C1orf185Q5T7R7 199 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 RHOVQ96L33 236 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 IDI2-AS1Q9NZ38 188 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 IL19Q9UHD0 177 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 USF3Q68DE3 2245 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 MDFIC2A0A1B0GVS7 189 aa11.1□□□□□ -0.63
SHMT2-222ENST00000555774 TIMP3P35625 211 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms