RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 LGALS1P09382 135 aaKnown RBP8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 ZNF616Q08AN1 781 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 OR4A47Q6IF82 309 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 ZBTB34Q8NCN2 500 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 ADAD2Q8NCV1 583 aaKnown RBP8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 OR6F1Q8NGZ6 308 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 TMEM167AQ8TBQ9 72 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 DCUN1D4Q92564 292 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 DLX4Q92988 240 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 OR2A7Q96R45 310 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 TINAGL1Q9GZM7 467 aaPredicted RBP8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 COA4Q9NYJ1 87 aa8.94□□□□□ -0.98
CCDC88C-208ENST00000554165 ANKRD34BA5PLL1 514 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 CGB1A6NKQ9 187 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 TEX22C9J3V5 150 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 TRBV12-3P01733 135 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 AREGP15514 252 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 KIR2DS2P43631 304 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 TSPAN5P62079 268 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 ZNF45Q02386 682 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 EGFEM1PQ0D2K5 195 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 ZNF585BQ52M93 769 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 PYHIN1Q6K0P9 492 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 MMD2Q8IY49 270 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 OR4D10Q8NGI6 311 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 MRAPQ8TCY5 172 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 DPF1Q92782 380 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 FYTTD1Q96QD9 318 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 SLIRPQ9GZT3 109 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 CCDC59Q9P031 241 aaKnown RBP8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 MTFP1Q9UDX5 166 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 SCOCQ9UIL1 159 aa8.93□□□□□ -0.98
CCDC88C-208ENST00000554165 SEC14L6B5MCN3 397 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 GPR31O00270 319 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 MPPED1O15442 326 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 RBFOX2O43251 390 aaKnown RBP eCLIP8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 ACTL6BO94805 426 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 DUS4LO95620 317 aaKnown RBP8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 HRASP01112 189 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 OR8U8P0C7N1 319 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 OR9G9P0C7N8 305 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 PI3P19957 117 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 LPAR6P43657 344 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 CATR1Q13166 79 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 FAAP20Q6NZ36 180 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 FCAMRQ8WWV6 532 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 C6orf62Q9GZU0 229 aaPredicted RBP8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 SLA2Q9H6Q3 261 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 HRASLSQ9HDD0 168 aa8.92□□□□□ -0.98
CCDC88C-208ENST00000554165 C13orf42A0A1B0GVH6 325 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 LINC01619G3V211 115 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 UPK2O00526 184 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 HPRT1P00492 218 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 REG1AP05451 166 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 HLA-GP17693 338 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 CD40LGP29965 261 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 RPL27AP46776 148 aaKnown RBP8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 VAX1Q5SQQ9 334 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 DGCR14Q96DF8 476 aaKnown RBP8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 DIRAS2Q96HU8 199 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 SPIN2AQ99865 258 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 SPIN2BQ9BPZ2 258 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 BCL7BQ9BQE9 202 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 MCRIP2Q9BUT9 160 aaKnown RBP8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 RSRP1Q9BUV0 290 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 AKIP1Q9NQ31 210 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 TMEM140Q9NV12 185 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 NSG2Q9Y328 171 aa8.91□□□□□ -0.98
CCDC88C-208ENST00000554165 SORL1Q92673 2214 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 H3BUA1 57 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 OVOL1O14753 267 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 NOL3O60936 208 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 OR2J3O76001 311 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 KRASP01116 189 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 HSPB1P04792 205 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 ZNF735P0CB33 412 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 NQO2P16083 231 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 F2RP25116 425 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 TNFSF8P32971 234 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 G6PCP35575 357 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 TAS2R31P59538 309 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 OR2B8PP59922 312 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 RPL8P62917 257 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 RHOGP84095 191 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 POU2AF1Q16633 256 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 RNASE10Q5GAN6 216 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 TBC1D26Q86UD7 250 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 HAPLN4Q86UW8 402 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 TTC9CQ8N5M4 171 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 VSTM2AQ8TAG5 236 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 MRGPRFQ96AM1 343 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 TMEM68Q96MH6 324 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 RBM38Q9H0Z9 239 aaKnown RBP8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 PLEKHA2Q9HB19 425 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 SLC2A9Q9NRM0 540 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 BET1LQ9NYM9 111 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 S4R3C0 116 aa8.9□□□□□ -0.98
CCDC88C-208ENST00000554165 TRBV9A0A0B4J1U6 114 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 CCDC160A6NGH7 325 aa8.89□□□□□ -0.99
CCDC88C-208ENST00000554165 GABARAPH6UMI1 98 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms