RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 KCNE1P15382 129 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 GZMHP20718 246 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 HIST1H1TP22492 207 aaPredicted RBP2.4□□□□□ -2.03
SCFD1-209ENST00000553280 OR4D2P58180 307 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 ZNF767PQ75MW2 155 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 C20orf196Q8IYI0 205 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 ZNF675Q8TD23 568 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 FGF13Q92913 245 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 DCUN1D1Q96GG9 259 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 TLNRD1Q9H1K6 362 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 CCL26Q9Y258 94 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 FAM215AQ9Y5M1 114 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 WRNQ14191 1432 aaPredicted RBP eCLIP2.4□□□□□ -2.03
SCFD1-209ENST00000553280 NCOA1Q15788 1441 aa2.4□□□□□ -2.03
SCFD1-209ENST00000553280 DHX57Q6P158 1386 aaKnown RBP2.39□□□□□ -2.03
SCFD1-209ENST00000553280 SLIT2O94813 1529 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 C3orf84H3BNL1 204 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 ZNF189O75820 626 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-209ENST00000553280 EDDM3AQ14507 147 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 GLT8D1Q68CQ7 371 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 SSX8Q7RTT4 187 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 XAGE1AQ9HD64 81 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 CMTM6Q9NX76 183 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 GLTPQ9NZD2 209 aa2.39□□□□□ -2.03
SCFD1-209ENST00000553280 TXNDC9O14530 226 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 UCHL1P09936 223 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 HSD11B1P28845 292 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 RAB13P51153 203 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 FXYD7P58549 80 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 AP1S1P61966 158 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 SNRPD2P62316 118 aaKnown RBP2.38□□□□□ -2.03
SCFD1-209ENST00000553280 POLR2GP62487 172 aaKnown RBP eCLIP2.38□□□□□ -2.03
SCFD1-209ENST00000553280 MIAQ16674 131 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 GUK1Q16774 197 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 TBC1D19Q8N5T2 526 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 OR5B17Q8NGF7 314 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 KLK6Q92876 244 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 PPP1R2P1Q96PQ5 205 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 MRPL27Q9P0M9 148 aaKnown RBP2.38□□□□□ -2.03
SCFD1-209ENST00000553280 PKIGQ9Y2B9 76 aa2.38□□□□□ -2.03
SCFD1-209ENST00000553280 MTUS2Q5JR59 1369 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 DSCAMO60469 2012 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 ADGRL3Q9HAR2 1447 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 A0A087WUJ7 227 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 TRGV5A0A0B4J1U4 118 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 MUC21A0A0G2JKD1 596 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 A0A0J9YY10 115 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 MUC21A0A140T8X8 626 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 A0A1B0GX78 115 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 KNCNA6PVL3 124 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 C2orf74A8MZ97 194 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 NSA2O95478 260 aaKnown RBP2.37□□□□□ -2.03
SCFD1-209ENST00000553280 HAND1O96004 215 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 TTRP02766 147 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 SRP19P09132 144 aaKnown RBP2.37□□□□□ -2.03
SCFD1-209ENST00000553280 CBR1P16152 277 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 CA5AP35218 305 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 RPL30P62888 115 aaKnown RBP2.37□□□□□ -2.03
SCFD1-209ENST00000553280 AKR1C1Q04828 323 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 SS18Q15532 418 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 GRK1Q15835 563 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 TMEM97Q5BJF2 176 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 LPCAT3Q6P1A2 487 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 DCSTAMPQ9H295 470 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 RSL24D1Q9UHA3 163 aaKnown RBP2.37□□□□□ -2.03
SCFD1-209ENST00000553280 SDK2Q58EX2 2172 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 NLRC5Q86WI3 1866 aa2.37□□□□□ -2.03
SCFD1-209ENST00000553280 ZNF638Q14966 1978 aaKnown RBP2.36□□□□□ -2.03
SCFD1-209ENST00000553280 TMEM269A0A1B0GVZ9 245 aa2.36□□□□□ -2.03
SCFD1-209ENST00000553280 RPL5P46777 297 aaKnown RBP2.36□□□□□ -2.03
SCFD1-209ENST00000553280 MEF2BQ02080 365 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-209ENST00000553280 SPA17Q15506 151 aa2.36□□□□□ -2.03
SCFD1-209ENST00000553280 Q6ZS49 121 aa2.36□□□□□ -2.03
SCFD1-209ENST00000553280 LHFPL1Q86WI0 220 aa2.36□□□□□ -2.03
SCFD1-209ENST00000553280 SLC35F6Q8N357 371 aa2.36□□□□□ -2.03
SCFD1-209ENST00000553280 ZNF283Q8N7M2 679 aa2.36□□□□□ -2.03
SCFD1-209ENST00000553280 ERMAPQ96PL5 475 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-209ENST00000553280 PRTFDC1Q9NRG1 225 aa2.36□□□□□ -2.03
SCFD1-209ENST00000553280 PAQR5Q9NXK6 330 aaPredicted RBP2.36□□□□□ -2.03
SCFD1-209ENST00000553280 TRBV20OR9-2A0A075B6H5 130 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 I3L521 148 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 HLA-DRB1P01911 266 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 BPGMP07738 259 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 ZNF705DP0CH99 300 aaPredicted RBP2.35□□□□□ -2.03
SCFD1-209ENST00000553280 S100A7P31151 101 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 CSN1S1P47710 185 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 HIST1H3AP68431 136 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 BASP1P80723 227 aaKnown RBP2.35□□□□□ -2.03
SCFD1-209ENST00000553280 MRPS25P82663 173 aaKnown RBP2.35□□□□□ -2.03
SCFD1-209ENST00000553280 H3F3AP84243 136 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 AGTRAPQ6RW13 159 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 Q6ZS52 159 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 OR8B12Q8NGG6 310 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 OR4X1Q8NH49 305 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 MRPL30Q8TCC3 161 aaKnown RBP2.35□□□□□ -2.03
SCFD1-209ENST00000553280 BORCS7Q96B45 105 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 Q9BRP9 147 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 TRIM4Q9C037 500 aa2.35□□□□□ -2.03
SCFD1-209ENST00000553280 WDR61Q9GZS3 305 aaKnown RBP2.35□□□□□ -2.03
SCFD1-209ENST00000553280 FBXO5Q9UKT4 447 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms