RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, human

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMA1-215	ENST00000552823		S4R3C0	116 aa		4.62	□□□□□ -1.67
LIMA1-215	ENST00000552823	COL27A1	Q8IZC6	1860 aa	Predicted RBP	4.62	□□□□□ -1.67
LIMA1-215	ENST00000552823	DCHS2	Q6V1P9	2916 aa		4.62	□□□□□ -1.67
LIMA1-215	ENST00000552823	KMT2E	Q8IZD2	1858 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	C15orf65	H3BRN8	121 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	IGLV1-44	P01699	117 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	GUSBP1	Q15486	140 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	DHRS7B	Q6IAN0	325 aa	Predicted RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	C1orf87	Q8N0U7	546 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823		Q8NA96	180 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	C12orf57	Q99622	126 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	HIPK2	Q9H2X6	1198 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	BIN3	Q9NQY0	253 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	FLNC	Q14315	2725 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	WNK1	Q9H4A3	2382 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	ZNF462	Q96JM2	2506 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823		A0A1W2PPQ1	181 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	GFRA3	O60609	400 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	CXCL1	P09341	107 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	THBS3	P49746	956 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	RPS23	P62266	143 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	ADIPOQ	Q15848	244 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823		Q6ZS49	121 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	CLDND2	Q8NHS1	167 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	PRR7	Q8TB68	274 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	TVP23C	Q96ET8	276 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	HSD17B10	Q99714	261 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	AGMAT	Q9BSE5	352 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	DERL1	Q9BUN8	251 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	MS4A5	Q9H3V2	200 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	C11orf1	Q9H5F2	150 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	LPAR2	Q9HBW0	351 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	NDRG3	Q9UGV2	375 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	TCF19	Q9Y242	345 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	TET2	Q6N021	2002 aa	Predicted RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	SRRM4	A7MD48	611 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	FAM157A	C9JC47	383 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	PRSS44	E7EML9	344 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	OR10J4	P0C629	311 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	RAB5A	P20339	215 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	ATP5G3	P48201	142 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	RAB5C	P51148	216 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	FAM3B	P58499	235 aa	Predicted RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	HABP2	Q14520	560 aa	Predicted RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	CDSN	Q15517	529 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	LRRC75B	Q2VPJ9	315 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	ZNF383	Q8NA42	475 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	LSM10	Q969L4	123 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	MRPL20	Q9BYC9	149 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	ARV1	Q9H2C2	271 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	SIRT7	Q9NRC8	400 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	CISD1	Q9NZ45	108 aa	Known RBP	4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	OR6C3	Q9NZP0	311 aa		4.61	□□□□□ -1.67
LIMA1-215	ENST00000552823	PPIAL4E	A0A075B759	164 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	TRBV6-6	A0A0A6YYG2	114 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	PPIAL4D	F5H284	164 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	HBE1	P02100	147 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	TRGC2	P03986	189 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	THBD	P07204	575 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	PPIAL4F	P0DN26	164 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	CD1B	P29016	333 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	C17orf58	Q2M2W7	97 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	RNF212	Q495C1	297 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	GFI1B	Q5VTD9	330 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	MBNL2	Q5VZF2	373 aa	Known RBP	4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	OR4A47	Q6IF82	309 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	C1orf162	Q8NEQ5	155 aa	Predicted RBP	4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	TMEM37	Q8WXS4	190 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	GAFA1	Q96PS6	74 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	TMEM147	Q9BVK8	224 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	ELOVL1	Q9BW60	279 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	SCRT1	Q9BWW7	348 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	IFI27L2	Q9H2X8	130 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	HES4	Q9HCC6	221 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	KIAA1456	Q9P272	454 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	LAMP3	Q9UQV4	416 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	PPIAL4A	Q9Y536	164 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	NAV2	Q8IVL1	2488 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	C15orf62	A8K5M9	175 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	C17orf100	A8MU93	164 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823		J3QR06	171 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	NDUFB3	O43676	98 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	SLC25A17	O43808	307 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	FOXH1	O75593	365 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	CA2	P00918	260 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	ADH4	P08319	380 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	BCL2	P10415	239 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	HOXB1	P14653	301 aa	Predicted RBP	4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	IGFBP2	P18065	325 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	LMO1	P25800	156 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	SLC35B1	P78383	322 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	FLI1	Q01543	452 aa	Predicted RBP	4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	MZT1	Q08AG7	82 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	RHEB	Q15382	184 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	OR10A7	Q8NGE5	316 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	OR13D1	Q8NGV5	346 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	LURAP1	Q96LR2	239 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	HARBI1	Q96MB7	349 aa		4.6	□□□□□ -1.67
LIMA1-215	ENST00000552823	SFXN3	Q9BWM7	321 aa		4.6	□□□□□ -1.67

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