RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 HECTD4Q9Y4D8 3996 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 PCLOQ9Y6V0 5065 aa12.55□□□□□ -0.4
VPS29-204ENST00000548259 OR4C46A6NHA9 309 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 LINC00473A8K010 186 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 TEX22C9J3V5 150 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 TSPAN4O14817 238 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 DENRO43583 198 aaKnown RBP12.54□□□□□ -0.4
VPS29-204ENST00000548259 CLEC3BP05452 202 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 CRYGCP07315 174 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 UCHL1P09936 223 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 TALDO1P37837 337 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 PSMD7P51665 324 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 PLAC9Q5JTB6 97 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 PLET1Q6UQ28 207 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 C11orf45Q8TAV5 145 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 C2CD4CQ8TF44 421 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 C5orf30Q96GV9 206 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 THYN1Q9P016 225 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 UBQLN2Q9UHD9 624 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 PSORS1C1Q9UIG5 152 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 S4R3C0 116 aa12.54□□□□□ -0.4
VPS29-204ENST00000548259 CYB5BO43169 146 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 ARL6IP5O75915 188 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 KBTBD11O94819 623 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 LINC00336Q6ZUF6 198 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 DHRSXQ8N5I4 330 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 ZNF645Q8N7E2 425 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 OR4S2Q8NH73 311 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 FANCD2OSQ96PS1 177 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 C8orf4Q9NR00 106 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 FBXL17Q9UF56 701 aa12.53□□□□□ -0.4
VPS29-204ENST00000548259 ZNF735P0CB33 412 aa12.52□□□□□ -0.41
VPS29-204ENST00000548259 RPL35AP18077 110 aaKnown RBP12.52□□□□□ -0.41
VPS29-204ENST00000548259 UNQ9165/PRO28630Q6UXU0 137 aa12.52□□□□□ -0.41
VPS29-204ENST00000548259 H1FOOQ8IZA3 346 aaPredicted RBP12.52□□□□□ -0.41
VPS29-204ENST00000548259 C8orf59Q8N0T1 100 aaPredicted RBP12.52□□□□□ -0.41
VPS29-204ENST00000548259 TMEM167AQ8TBQ9 72 aa12.52□□□□□ -0.41
VPS29-204ENST00000548259 FAM3DQ96BQ1 224 aa12.52□□□□□ -0.41
VPS29-204ENST00000548259 AIFM2Q9BRQ8 373 aa12.52□□□□□ -0.41
VPS29-204ENST00000548259 MAP6D1Q9H9H5 199 aa12.52□□□□□ -0.41
VPS29-204ENST00000548259 RAB22AQ9UL26 194 aa12.52□□□□□ -0.41
VPS29-204ENST00000548259 DNAH10Q8IVF4 4471 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 HRASP01112 189 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 IL6RP08887 468 aaPredicted RBP12.51□□□□□ -0.41
VPS29-204ENST00000548259 CTRB1P17538 263 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 CRHBPP24387 322 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 GPR183P32249 361 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 CMC4P56277 68 aaPredicted RBP12.51□□□□□ -0.41
VPS29-204ENST00000548259 C2orf76Q3KRA6 126 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 CTRB2Q6GPI1 263 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 VKORC1L1Q8N0U8 176 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 BPIFB6Q8NFQ5 453 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 RARRES2Q99969 163 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 DAZ1Q9NQZ3 744 aaKnown RBP12.51□□□□□ -0.41
VPS29-204ENST00000548259 PLCXD1Q9NUJ7 323 aa12.51□□□□□ -0.41
VPS29-204ENST00000548259 AK6Q9Y3D8 172 aaKnown RBP12.51□□□□□ -0.41
VPS29-204ENST00000548259 MPTX1A8MV57 137 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 CTXN2P0C2S0 81 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 AREGP15514 252 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 RPL8P62917 257 aaKnown RBP12.5□□□□□ -0.41
VPS29-204ENST00000548259 SPHARQ15513 63 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 TRAM1Q15629 374 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 KLK9Q2XQG4 91 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 OR2B11Q5JQS5 317 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 C19orf35Q6ZS72 473 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 UFD1Q92890 307 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 HSD17B10Q99714 261 aaKnown RBP12.5□□□□□ -0.41
VPS29-204ENST00000548259 CSTL1Q9H114 145 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 C11orf68Q9H3H3 251 aaKnown RBP12.5□□□□□ -0.41
VPS29-204ENST00000548259 KLK9Q9UKQ9 250 aa12.5□□□□□ -0.41
VPS29-204ENST00000548259 IGLV11-55A0A075B6I3 123 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 MFSD2BA6NFX1 497 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 MED14OSP0DP75 135 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 ADMP35318 185 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 CLDN12P56749 244 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 NANOS2P60321 138 aaKnown RBP12.49□□□□□ -0.41
VPS29-204ENST00000548259 ARL6IP1Q15041 203 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 ODF3L2Q3SX64 289 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 Q6ZS49 121 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 CENPSQ8N2Z9 138 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 OR5B3Q8NH48 314 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 TCTEX1D2Q8WW35 142 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 MAFIPQ8WZ33 124 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 RBMX2Q9Y388 322 aaKnown RBP12.49□□□□□ -0.41
VPS29-204ENST00000548259 OR2W1Q9Y3N9 320 aa12.49□□□□□ -0.41
VPS29-204ENST00000548259 A0A075B6Q4 140 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 IGHV3-35A0A0C4DH35 117 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 J3QRK9 145 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 GNB3P16520 340 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 HLA-GP17693 338 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 PSMA1P25786 263 aaKnown RBP12.48□□□□□ -0.41
VPS29-204ENST00000548259 PTBP1P26599 531 aaKnown RBP eCLIP12.48□□□□□ -0.41
VPS29-204ENST00000548259 PUSL1Q8N0Z8 303 aaKnown RBP12.48□□□□□ -0.41
VPS29-204ENST00000548259 PACRGLQ8N7B6 248 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 OR10R2Q8NGX6 335 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 OR4A5Q8NH83 315 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 CD300LFQ8TDQ1 290 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 TMEM190Q8WZ59 177 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 TMEM203Q969S6 136 aa12.48□□□□□ -0.41
VPS29-204ENST00000548259 ZNF436Q9C0F3 470 aaPredicted RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms