RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MOB3BQ86TA1 216 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 KDF1Q8NAX2 398 aaPredicted RBP9.08□□□□□ -0.96
CUX1-212ENST00000547394 TMEM170AQ8WVE7 144 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 COA4Q9NYJ1 87 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 NKX6-3A6NJ46 265 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 CD3EP07766 207 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 CT45A6P0DMU7 189 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 CT45A5P0DMU8 189 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 CT45A7P0DMV0 189 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 HOXA1P49639 335 aaPredicted RBP9.08□□□□□ -0.96
CUX1-212ENST00000547394 CTAG1AP78358 180 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 ADORA2A-AS1P86434 159 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 RELBQ01201 579 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 PAX5Q02548 391 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 SOHLH1Q5JUK2 328 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 TEX36Q5VZQ5 186 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 DDB2Q92466 427 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 MRPL20Q9BYC9 149 aaKnown RBP9.08□□□□□ -0.96
CUX1-212ENST00000547394 EGLN1Q9GZT9 426 aa9.08□□□□□ -0.96
CUX1-212ENST00000547394 TRAV38-1A0A0B4J264 116 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 NQO2P16083 231 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 RAB11AP62491 216 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 TLE4Q04727 773 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 ZNF439Q8NDP4 499 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 CLDND2Q8NHS1 167 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 PBDC1Q9BVG4 233 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 RPUSD1Q9UJJ7 312 aaKnown RBP9.07□□□□□ -0.96
CUX1-212ENST00000547394 A0A1W2PPH5 198 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 hADV38S2A0JD32 116 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 SCAF4O95104 1147 aaKnown RBP9.07□□□□□ -0.96
CUX1-212ENST00000547394 IFNA4P05014 189 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 APELAP0DMC3 54 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 CA7P43166 264 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 CASP6P55212 293 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 FFAR4Q5NUL3 377 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 DHRS7BQ6IAN0 325 aaPredicted RBP9.07□□□□□ -0.96
CUX1-212ENST00000547394 SSMEM1Q8WWF3 244 aa9.07□□□□□ -0.96
CUX1-212ENST00000547394 PATZ1Q9HBE1 687 aaKnown RBP9.07□□□□□ -0.96
CUX1-212ENST00000547394 USP9XQ93008 2570 aaPredicted RBP9.07□□□□□ -0.96
CUX1-212ENST00000547394 IGHV1-69-2A0A0G2JMI3 117 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 MAP1LC3B2A6NCE7 125 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 FAM90A26D6RGX4 464 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 IGHV3-48P01763 117 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 CRYBA1P05813 215 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 CA5BP1Q8WTZ4 195 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 ZNF714Q96N38 554 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 MAP1LC3BQ9GZQ8 125 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 TCF19Q9Y242 345 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 KPTNQ9Y664 436 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 URGCP-MRPS24S4R325 110 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 hCG_1809904A0A1W2PP81 198 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 A0A1W2PR64 198 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 A0A1W2PRV1 198 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 PPIHO43447 177 aaKnown RBP9.06□□□□□ -0.96
CUX1-212ENST00000547394 SRP19P09132 144 aaKnown RBP9.06□□□□□ -0.96
CUX1-212ENST00000547394 MLANAQ16655 118 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 MUC15Q8N387 334 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 OR10W1Q8NGF6 305 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 OR13D1Q8NGV5 346 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 OR4S2Q8NH73 311 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 TMEM204Q9BSN7 226 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 NPCDR1Q9BY65 106 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 NDUFB3O43676 98 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 CHRNB4P30926 498 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 KLRB1Q12918 225 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 KIAA0141Q14154 515 aaPredicted RBP9.06□□□□□ -0.96
CUX1-212ENST00000547394 C10orf55Q5SWW7 151 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 LHX4Q969G2 390 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 RITA1Q96K30 269 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 TMEM147Q9BVK8 224 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 SLC35D1Q9NTN3 355 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 KIAA1456Q9P272 454 aa9.06□□□□□ -0.96
CUX1-212ENST00000547394 ZNF729A6NN14 1252 aaPredicted RBP9.05□□□□□ -0.96
CUX1-212ENST00000547394 H3BQ15 152 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 OR8U8P0C7N1 319 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 LOXP28300 417 aaPredicted RBP9.05□□□□□ -0.96
CUX1-212ENST00000547394 RAB7AP51149 207 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 FAM24BQ8N5W8 94 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 NGBQ9NPG2 151 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 BIN3Q9NQY0 253 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 SLC39A9Q9NUM3 307 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 LINC00312Q9Y6C7 94 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 E7EUB6 86 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 APOBEC3AP31941 199 aaPredicted RBP9.05□□□□□ -0.96
CUX1-212ENST00000547394 B2MP61769 119 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 ZNF674Q2M3X9 581 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 TMEM41BQ5BJD5 291 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 ZNF343Q6P1L6 599 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 SLC25A48Q6ZT89 311 aaKnown RBP9.05□□□□□ -0.96
CUX1-212ENST00000547394 OR10G4Q8NGN3 311 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 OR10G9Q8NGN4 311 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 OR10G7Q8NGN6 311 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 OR10X1Q8NGY0 326 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 MS4A5Q9H3V2 200 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 LAMP3Q9UQV4 416 aa9.05□□□□□ -0.96
CUX1-212ENST00000547394 UQCRFS1P47985 274 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 LRRC10Q5BKY1 277 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 MIC13Q5XKP0 118 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 C1orf87Q8N0U7 546 aa9.04□□□□□ -0.96
CUX1-212ENST00000547394 LFNGQ8NES3 379 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms