RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 MGAT4AQ9UM21 535 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 DOCK11Q5JSL3 2073 aa4.12□□□□□ -1.75
CLIP1-217ENST00000543205 TLN2Q9Y4G6 2542 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 FAM25AB3EWG3 89 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 FAM25CB3EWG5 89 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 FAM25GB3EWG6 89 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 SDCBPO00560 298 aaPredicted RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 MFNGO00587 321 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 NPFFO15130 113 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ADAP1O75689 374 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 MMP23AO75900 390 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 NXPH3O95157 252 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 NAPSAO96009 420 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 IFNA2P01563 188 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ARG1P05089 322 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 CGB3P0DN86 165 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 CGB7P0DN87 165 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 RCC1P18754 421 aaPredicted RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 SSTR5P35346 364 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 MNDAP41218 407 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 GNG2P59768 71 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 HNF4GQ14541 408 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM69Q5SWH9 247 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ASPHD1Q5U4P2 390 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 HACD4Q5VWC8 232 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 RUSC1-AS1Q66K80 236 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 OLFML2AQ68BL7 652 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 RBMS3Q6XE24 437 aaKnown RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 MOB1BQ7L9L4 216 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 STX12Q86Y82 276 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 GAPTQ8N292 157 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ABHD12Q8N2K0 398 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 OR10A7Q8NGE5 316 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 DYNC2LI1Q8TCX1 351 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 C22orf15Q8WYQ4 148 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 GALMQ96C23 342 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 CYYR1Q96J86 154 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 C7orf50Q9BRJ6 194 aaKnown RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 HDHD3Q9BSH5 251 aaPredicted RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 CLEC7AQ9BXN2 247 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM133Q9H2Q1 129 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 RANBP3Q9H6Z4 567 aaPredicted RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 TAF9BQ9HBM6 251 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 AKIP1Q9NQ31 210 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 CCDC59Q9P031 241 aaKnown RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 NAGKQ9UJ70 344 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 TRBV6-6A0A0A6YYG2 114 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV2-26A0A0B4J1V2 119 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 MEIOCA2RUB1 952 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 FAM172BPA6NC97 362 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM235A6NFC5 223 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 FABP12A6NFH5 140 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 C12orf77C9JDV5 145 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 C15orf65H3BRN8 121 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 RGS5O15539 181 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 HPGDSO60760 199 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 HBZP02008 142 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 EIF4EP06730 217 aaKnown RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 TNFSF8P32971 234 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 CEACAM3P40198 252 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 PITPNAQ00169 270 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 PSG3Q16557 428 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 TMEM30BQ3MIR4 351 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF260Q3ZCT1 412 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 MIDNQ504T8 468 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 HCP5Q6MZN7 132 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 C9orf139Q6ZV77 190 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 Q75L30 129 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF554Q86TJ5 538 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 BOD1L2Q8IYS8 172 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 OR11H6Q8NGC7 330 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 OR1L1Q8NH94 360 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 UBALD1Q8TB05 177 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ZNF418Q8TF45 676 aaPredicted RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 CAPSLQ8WWF8 208 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 DGCR14Q96DF8 476 aaKnown RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 UHRF2Q96PU4 802 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 S1PR3Q99500 378 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 SLC6A7Q99884 636 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 C6orf62Q9GZU0 229 aaPredicted RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 RBM38Q9H0Z9 239 aaKnown RBP4.11□□□□□ -1.75
CLIP1-217ENST00000543205 LINC00574Q9H8X3 128 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 OR2S2Q9NQN1 319 aa4.11□□□□□ -1.75
CLIP1-217ENST00000543205 ZANQ9Y493 2812 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 WNK2Q9Y3S1 2297 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV3-43A0A0B4J1X8 118 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 GAGE12BA1L429 117 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 GAGE12HA6NDE8 117 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 TRDCB7Z8K6 153 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV3-7P01780 117 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 FCGR3AP08637 254 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 IGHV3-43DP0DP04 118 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 ELK1P19419 428 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 DTYMKP23919 212 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 SAA4P35542 130 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 KIR2DS4P43632 304 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 GNG10P50151 68 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 HLA-DRB3P79483 266 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 DGCR2P98153 550 aa4.1□□□□□ -1.75
CLIP1-217ENST00000543205 KIR2DS1Q14954 304 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms