RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 RPEL1Q2QD12 228 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 FFAR4Q5NUL3 377 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 TPTE2P1Q5T6R2 138 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 FAM27BQ5VT28 67 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 TMEM42Q69YG0 159 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 OR8G2PQ6IF36 304 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 ZNF818PQ6ZRF7 136 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 C1orf174Q8IYL3 243 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 METTL27Q8N6F8 245 aaPredicted RBP5.51□□□□□ -1.53
USP28-202ENST00000535607 OR1F12Q8NHA8 337 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 SGMS2Q8NHU3 365 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 VN1R17PQ8TDU5 208 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 RAB1CQ92928 201 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 ZNF524Q96C55 264 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 GPR146Q96CH1 333 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 STARD4Q96DR4 205 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 FAM122AQ96E09 287 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 SMIM12Q96EX1 92 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 ZPBPQ9BS86 351 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 GNB1LQ9BYB4 327 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 RTN4RQ9BZR6 473 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 ELOVL5Q9NYP7 299 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 IL36BQ9NZH7 164 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 TAAR3PQ9P1P4 343 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 ZNF319Q9P2F9 582 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 OR2W1Q9Y3N9 320 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 CACNA1CQ13936 2221 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 SDK1Q7Z5N4 2213 aa5.51□□□□□ -1.53
USP28-202ENST00000535607 TRAV30A0A087WSZ9 112 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 SAA2-SAA4A0A096LPE2 208 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 UBE2L5PA0A1B0GUS4 154 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 A0A1B0GX78 115 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 A6NNC1 897 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 NPIPB11E5RHQ5 1161 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 H3BMH7 237 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 TRAPPC2LH3BP13 241 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 FCN1O00602 326 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 TNFSF11O14788 317 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 SPRY1O43609 319 aaPredicted RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 ANGPTL7O43827 346 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 PAGE4O60829 102 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 CLDN1O95832 211 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 TOMM40O96008 361 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 CD55P08174 381 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 RFPL3SP0C7P2 107 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 ARR3P36575 388 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 CDC34P49427 236 aaPredicted RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 KRTDAPP60985 99 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 FOXF2Q12947 444 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 TRIP6Q15654 476 aaKnown RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 ZNF726P1Q15940 193 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 HLA-DRB5Q30154 266 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 SPATA45Q537H7 98 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 SPANXN5Q5MJ07 72 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 STUMQ69YW2 141 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 RNF144BQ7Z419 303 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 LINC01551Q86U37 167 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 MCEMP1Q8IX19 187 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 Q8NFD4 153 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 PSMF1Q92530 271 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 ZNF501Q96CX3 271 aaPredicted RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 OR4C12Q96R67 309 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 VPS25Q9BRG1 176 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 ALKBH7Q9BT30 221 aaPredicted RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 RBM24Q9BX46 236 aaKnown RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 ULBP2Q9BZM5 246 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 TUBG2Q9NRH3 451 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 FGF21Q9NSA1 209 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 CACNG5Q9UF02 275 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 RARRES3Q9UL19 164 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 RBM7Q9Y580 266 aaKnown RBP5.5□□□□□ -1.53
USP28-202ENST00000535607 COX11Q9Y6N1 276 aa5.5□□□□□ -1.53
USP28-202ENST00000535607 PHF3Q92576 2039 aaKnown RBP5.49□□□□□ -1.53
USP28-202ENST00000535607 IGHV1-69-2A0A0G2JMI3 117 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 HSBP1L1C9JCN9 74 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 H3BP45 60 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 PRKNO60260 465 aaPredicted RBP5.49□□□□□ -1.53
USP28-202ENST00000535607 CIDEAO60543 219 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 YPEL1O60688 119 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 ZFAND5O76080 213 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 TMEM50AO95807 157 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 CXorf1O96002 111 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 NAPSAO96009 420 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 NHLRC4P0CG21 123 aaPredicted RBP5.49□□□□□ -1.53
USP28-202ENST00000535607 FGF12P61328 243 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 ARF6P62330 175 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 TGFBR3Q03167 851 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 CATR1Q13166 79 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 RAB31Q13636 194 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 PIGYQ3MUY2 71 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 TMEM14EPQ6UXP3 125 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 ASCL5Q7RTU5 278 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 LRP11Q86VZ4 500 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 PRSS58Q8IYP2 241 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 TMEM256Q8N2U0 113 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 C17orf78Q8N4C9 275 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 RPP25LQ8N5L8 163 aaKnown RBP5.49□□□□□ -1.53
USP28-202ENST00000535607 OR10V1Q8NGI7 309 aa5.49□□□□□ -1.53
USP28-202ENST00000535607 OR1L6Q8NGR2 347 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms