RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 MEGF9Q9H1U4 602 aa11.45□□□□□ -0.58
TRIM3-212ENST00000533064 ZFP57Q9NU63 452 aa11.45□□□□□ -0.58
TRIM3-212ENST00000533064 ZFHX3Q15911 3703 aa11.45□□□□□ -0.58
TRIM3-212ENST00000533064 MTORP42345 2549 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 IGKV1-16P04430 117 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 S100A10P60903 97 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 TMEM177Q53S58 311 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 IL17RELQ6ZVW7 336 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 INO80EQ8NBZ0 244 aaPredicted RBP11.44□□□□□ -0.58
TRIM3-212ENST00000533064 OR2T10Q8NGZ9 312 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 R3HDM4Q96D70 268 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 ARL6Q9H0F7 186 aa11.44□□□□□ -0.58
TRIM3-212ENST00000533064 MARCH11A6NNE9 402 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 VENTXO95231 258 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 MOSP00540 346 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 KRASP01116 189 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 IGKV1D-33P01593 117 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 IGKV1-33P01594 117 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 RLN2P04090 185 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 FAM106CPP0CH98 169 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 SLC25A6P12236 298 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 SMCO1Q147U7 214 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 KCNRGQ8N5I3 272 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 OR4D5Q8NGN0 318 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 C22orf15Q8WYQ4 148 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 DCUN1D4Q92564 292 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 LSM10Q969L4 123 aaKnown RBP11.43□□□□□ -0.58
TRIM3-212ENST00000533064 RNF5Q99942 180 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 RNF222A6NCQ9 220 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 DEDDO75618 318 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 IGKV1-39P01597 117 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 MBPP02686 304 aaPredicted RBP11.43□□□□□ -0.58
TRIM3-212ENST00000533064 IGKV1D-39P04432 117 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 SNRNP70P08621 437 aaKnown RBP11.43□□□□□ -0.58
TRIM3-212ENST00000533064 G6PCP35575 357 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 LGALS7P47929 136 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 DYNLT3P51808 116 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 LRRC75BQ2VPJ9 315 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 THOC7Q6I9Y2 204 aaKnown RBP11.43□□□□□ -0.58
TRIM3-212ENST00000533064 H2BFWTQ7Z2G1 175 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 THNSL2Q86YJ6 484 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 FAM219AQ8IW50 185 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 OR1S1Q8NH92 325 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 ZDHHC16Q969W1 377 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 RHOVQ96L33 236 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 TSNAXQ99598 290 aaKnown RBP11.43□□□□□ -0.58
TRIM3-212ENST00000533064 SSX3Q99909 188 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 OR5AC2Q9NZP5 309 aa11.43□□□□□ -0.58
TRIM3-212ENST00000533064 A0A1B0GU03 582 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 TMEM11P17152 192 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 CD24P25063 80 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 NUP62P37198 522 aaPredicted RBP11.42□□□□□ -0.58
TRIM3-212ENST00000533064 AP2S1P53680 142 aaPredicted RBP11.42□□□□□ -0.58
TRIM3-212ENST00000533064 AANATQ16613 207 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 DEFB112Q30KQ8 113 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 VMA21Q3ZAQ7 101 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 ZNF767PQ75MW2 155 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 SSX9Q7RTT3 188 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 BCL6BQ8N143 479 aaPredicted RBP11.42□□□□□ -0.58
TRIM3-212ENST00000533064 CDC42EP3Q9UKI2 254 aa11.42□□□□□ -0.58
TRIM3-212ENST00000533064 FAM90A9PA6NNJ1 464 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 CYSRT1A8MQ03 144 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 K7EPK0 472 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 ST8SIA3O43173 380 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 SCGB1D2O95969 90 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 HNF4GQ14541 408 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 TEX261Q6UWH6 196 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 FOXRED2Q8IWF2 684 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 FAM71E2Q8N5Q1 922 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 OR8H1Q8NGG4 311 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 VSTM2AQ8TAG5 236 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 EAF1Q96JC9 268 aaPredicted RBP11.41□□□□□ -0.58
TRIM3-212ENST00000533064 KIAA1456Q9P272 454 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 LSM5Q9Y4Y9 91 aaKnown RBP11.41□□□□□ -0.58
TRIM3-212ENST00000533064 MMP24Q9Y5R2 645 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 SOX21Q9Y651 276 aaPredicted RBP11.41□□□□□ -0.58
TRIM3-212ENST00000533064 POMT1Q9Y6A1 747 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 U3KQ87 197 aa11.41□□□□□ -0.58
TRIM3-212ENST00000533064 NSD1Q96L73 2696 aaPredicted RBP11.4□□□□□ -0.58
TRIM3-212ENST00000533064 BTBD17A6NE02 478 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 IGKV1-5P01602 117 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 EBI3Q14213 229 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 MMDQ15546 238 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 VKORC1L1Q8N0U8 176 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 GPR146Q96CH1 333 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 AQP10Q96PS8 301 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 C1RLQ9NZP8 487 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 PITPNC1Q9UKF7 332 aa11.4□□□□□ -0.58
TRIM3-212ENST00000533064 KANTRA0A1W2PQU2 76 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 E5RGE8 158 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 H3BUX3 64 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 PITX3O75364 302 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 RBMXL2O75526 392 aaKnown RBP11.4□□□□□ -0.59
TRIM3-212ENST00000533064 NKX2-1P43699 371 aaPredicted RBP11.4□□□□□ -0.59
TRIM3-212ENST00000533064 PLGLAQ15195 96 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 POU2AF1Q16633 256 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 RBMXL1Q96E39 390 aaKnown RBP11.4□□□□□ -0.59
TRIM3-212ENST00000533064 TMEM140Q9NV12 185 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 NSG2Q9Y328 171 aa11.4□□□□□ -0.59
TRIM3-212ENST00000533064 A0A0G2JRQ6 117 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms