RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	FLYWCH2	Q96CP2	140 aa	Known RBP	4.6	□□□□□ -1.67
CD44-231	ENST00000531110	SLC25A38	Q96DW6	304 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	SCGB3A2	Q96PL1	93 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	MCHR1	Q99705	422 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	HES4	Q9HCC6	221 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	THYN1	Q9P016	225 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	CSAG2	Q9Y5P2	127 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	SNED1	Q8TER0	1413 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	DOCK7	Q96N67	2140 aa		4.6	□□□□□ -1.67
CD44-231	ENST00000531110	TEX48	A0A1B0GUV7	120 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110		A0A1W2PPM0	123 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	DPRX	A6NFQ7	191 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SHISA7	A6NL88	538 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110		J3QRE1	110 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	BMPR1B	O00238	502 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SPRY1	O43609	319 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-231	ENST00000531110	STK17B	O94768	372 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	IGHG1	P01857	330 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ATP5G1	P05496	136 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	KLK1	P06870	262 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	RPS12	P25398	132 aa	Known RBP	4.59	□□□□□ -1.67
CD44-231	ENST00000531110	HRH1	P35367	487 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	OPRM1	P35372	400 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ATP5G3	P48201	142 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	RHOA	P61586	193 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	MRPS6	P82932	125 aa	Known RBP	4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ATP5G2	Q06055	141 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ACSM2A	Q08AH3	577 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SCN5A	Q14524	2016 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	IHH	Q14623	411 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	MIA3	Q5JRA6	1907 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	CLEC12A	Q5QGZ9	265 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ACSM2B	Q68CK6	577 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110		Q6AWC8	147 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ASPHD2	Q6ICH7	369 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	C9orf139	Q6ZV77	190 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	IL17REL	Q6ZVW7	336 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4.59	□□□□□ -1.67
CD44-231	ENST00000531110	MSRB3	Q8IXL7	192 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SAXO1	Q8IYX7	474 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	OR11H6	Q8NGC7	330 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	OR4A16	Q8NH70	328 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	OR4A5	Q8NH83	315 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ZNRF4	Q8WWF5	429 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	OR5P2	Q8WZ92	322 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	OR5P3	Q8WZ94	311 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	RPE	Q96AT9	228 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM70	Q9BUB7	260 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	MCRIP2	Q9BUT9	160 aa	Known RBP	4.59	□□□□□ -1.67
CD44-231	ENST00000531110	HCAR1	Q9BXC0	346 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SMIM3	Q9BZL3	60 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	CHST6	Q9GZX3	395 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SIRPD	Q9H106	197 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	CALHM2	Q9HA72	323 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SH2D2A	Q9NP31	389 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ENY2	Q9NPA8	101 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	SLC25A37	Q9NYZ2	338 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	B9D1	Q9UPM9	204 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF257	Q9Y2Q1	563 aa		4.59	□□□□□ -1.67
CD44-231	ENST00000531110	NCKAP5	O14513	1909 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110		A0A0B4J2E0	115 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	SPAAR	A0A1B0GVQ0	90 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110		A0A1B0GX12	115 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110		A0A1W2PPI3	338 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	ODAM	A1E959	279 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	C1orf226	A1L170	272 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	PRSS37	A4D1T9	235 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF727	A8MUV8	499 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	FNDC10	F2Z333	226 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110		F5H5K5	113 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	KRAS	P01116	189 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	SP1	P08047	785 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	FABP2	P12104	132 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF43	P17038	809 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	KIR2DS2	P43631	304 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	GPR1	P46091	355 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	OR1E2	P47887	323 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	NDUFV3	P56181	108 aa	Known RBP	4.58	□□□□□ -1.68
CD44-231	ENST00000531110	CAV3	P56539	151 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF146	Q15072	292 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	IGFBP7	Q16270	282 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	SLC25A35	Q3KQZ1	300 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	C1orf220	Q5T0J3	134 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	TXNRD3NB	Q6F5E7	133 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF880	Q6PDB4	577 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	MORN3	Q6PF18	240 aa	Predicted RBP	4.58	□□□□□ -1.68
CD44-231	ENST00000531110	SLC25A34	Q6PIV7	304 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	CEACAM20	Q6UY09	585 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110		Q6ZUT4	128 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	OR1L4	Q8NGR5	311 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	OR10AG1	Q8NH19	301 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	OR10D3	Q8NH80	312 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	SGMS2	Q8NHU3	365 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	MRPL30	Q8TCC3	161 aa	Known RBP	4.58	□□□□□ -1.68
CD44-231	ENST00000531110	RNF138	Q8WVD3	245 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	C10orf35	Q96D05	121 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	C2orf50	Q96LR7	162 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	MYADM	Q96S97	322 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	VGLL1	Q99990	258 aa		4.58	□□□□□ -1.68
CD44-231	ENST00000531110	TM2D1	Q9BX74	207 aa		4.58	□□□□□ -1.68

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