RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SOD3P08294 240 aa17.52■□□□□ 0.4
VPS28-205ENST00000526204 CT45A1Q5HYN5 189 aa17.52■□□□□ 0.4
VPS28-205ENST00000526204 CT45A3Q8NHU0 189 aa17.52■□□□□ 0.4
VPS28-205ENST00000526204 PITPNC1Q9UKF7 332 aa17.52■□□□□ 0.4
VPS28-205ENST00000526204 ASPMQ8IZT6 3477 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 TRAV38-1A0A0B4J264 116 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 C15orf61A6NNL5 157 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 IGHV2-70P01814 119 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 CRYABP02511 175 aaKnown RBP17.51■□□□□ 0.39
VPS28-205ENST00000526204 PYY3Q5JQD4 70 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 TRAV3A0A0B4J244 114 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 F6UZH7 168 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 HRASP01112 189 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 DEFA4P12838 97 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 RHOVQ96L33 236 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 GPR61Q9BZJ8 451 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 MS4A5Q9H3V2 200 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 NPVFQ9HCQ7 196 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 GCM1Q9NP62 436 aa17.51■□□□□ 0.39
VPS28-205ENST00000526204 FOXA2Q9Y261 457 aaPredicted RBP17.51■□□□□ 0.39
VPS28-205ENST00000526204 SAA2-SAA4A0A096LPE2 208 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 PPP5D1E7EU14 171 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 SAA2P0DJI9 122 aaPredicted RBP17.5■□□□□ 0.39
VPS28-205ENST00000526204 TNFSF4P23510 183 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 TNFAIP6P98066 277 aaPredicted RBP17.5■□□□□ 0.39
VPS28-205ENST00000526204 TMEM30BQ3MIR4 351 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 C4orf17Q53FE4 359 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 GCSAMLQ5JQS6 135 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 STUMQ69YW2 141 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 ABHD12Q8N2K0 398 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 RPRMLQ8N4K4 120 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 OR10D4PQ8NGN7 298 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 MGST2Q99735 147 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 DMRT1Q9Y5R6 373 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 SRP14P37108 136 aaKnown RBP17.5■□□□□ 0.39
VPS28-205ENST00000526204 NECAP1Q8NC96 275 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 OR4X1Q8NH49 305 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 GGTLC1Q9BX51 225 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 TMEM14BQ9NUH8 114 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 PXMP4Q9Y6I8 212 aa17.5■□□□□ 0.39
VPS28-205ENST00000526204 HEATR1Q9H583 2144 aaKnown RBP17.49■□□□□ 0.39
VPS28-205ENST00000526204 NPPCP23582 126 aa17.49■□□□□ 0.39
VPS28-205ENST00000526204 HSPE1P61604 102 aaKnown RBP17.49■□□□□ 0.39
VPS28-205ENST00000526204 MRPS11P82912 194 aaKnown RBP17.49■□□□□ 0.39
VPS28-205ENST00000526204 FAM201AQ5SY85 155 aa17.49■□□□□ 0.39
VPS28-205ENST00000526204 GFI1BQ5VTD9 330 aa17.49■□□□□ 0.39
VPS28-205ENST00000526204 C1orf229Q6ZS94 237 aaPredicted RBP17.49■□□□□ 0.39
VPS28-205ENST00000526204 LEAP2Q969E1 77 aa17.49■□□□□ 0.39
VPS28-205ENST00000526204 LINC00574Q9H8X3 128 aa17.49■□□□□ 0.39
VPS28-205ENST00000526204 DOCK11Q5JSL3 2073 aa17.49■□□□□ 0.39
VPS28-205ENST00000526204 TMPRSS2O15393 492 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 CXorf1O96002 111 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 IGHV1-46P01743 117 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 SELLP14151 372 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 CD99P14209 185 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 CEACAM8P31997 349 aaPredicted RBP17.48■□□□□ 0.39
VPS28-205ENST00000526204 FAM3BP58499 235 aaPredicted RBP17.48■□□□□ 0.39
VPS28-205ENST00000526204 CST9LP1Q5W188 147 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 TMEM170AQ8WVE7 144 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 PATZ1Q9HBE1 687 aaKnown RBP17.48■□□□□ 0.39
VPS28-205ENST00000526204 ENY2Q9NPA8 101 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 LSM4Q9Y4Z0 139 aaKnown RBP17.48■□□□□ 0.39
VPS28-205ENST00000526204 ZNF729A6NN14 1252 aaPredicted RBP17.48■□□□□ 0.39
VPS28-205ENST00000526204 TM4SF5O14894 197 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 STAG3L2P0CL84 134 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 STAG3L3P0CL85 134 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 POU2AF1Q16633 256 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 OR4A47Q6IF82 309 aa17.48■□□□□ 0.39
VPS28-205ENST00000526204 NPY1RP25929 384 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 RAB31Q13636 194 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 RTP5Q14D33 572 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 KRTCAP3Q53RY4 240 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 DNLZQ5SXM8 178 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 KCNIP4Q6PIL6 250 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 LYG1Q8N1E2 194 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 ZNF439Q8NDP4 499 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 SLC24A4Q8NFF2 622 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 IDI2-AS1Q9NZ38 188 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 GGCTO75223 188 aaKnown RBP17.47■□□□□ 0.39
VPS28-205ENST00000526204 GNB1P62873 340 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 MIC13Q5XKP0 118 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 TEPPQ6URK8 271 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 ZNF383Q8NA42 475 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 OR2T10Q8NGZ9 312 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 CORO2AQ92828 525 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 GAFA1Q96PS6 74 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 LOC400499M0QZD8 3231 aa17.47■□□□□ 0.39
VPS28-205ENST00000526204 A8MXE2 369 aa17.46■□□□□ 0.39
VPS28-205ENST00000526204 ARL14EPLP0DKL9 152 aa17.46■□□□□ 0.39
VPS28-205ENST00000526204 UBE2G2P60604 165 aa17.46■□□□□ 0.39
VPS28-205ENST00000526204 PDZD11Q5EBL8 140 aa17.46■□□□□ 0.39
VPS28-205ENST00000526204 UTF1Q5T230 341 aa17.46■□□□□ 0.39
VPS28-205ENST00000526204 ZNF788Q6ZQV5 615 aa17.46■□□□□ 0.39
VPS28-205ENST00000526204 LINC01551Q86U37 167 aa17.46■□□□□ 0.39
VPS28-205ENST00000526204 IRF2P14316 349 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 CD40P25942 277 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 ATP5G3P48201 142 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 NUBP1P53384 320 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 BTF3L4Q96K17 158 aa17.45■□□□□ 0.38
VPS28-205ENST00000526204 PCGF1Q9BSM1 259 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms