RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 Q8N9W7 124 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 OR4F5Q8NH21 305 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 IL22RA2Q969J5 263 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 RHOVQ96L33 236 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 RNF5Q99942 180 aa12.16□□□□□ -0.46
LSM1-203ENST00000520755 RANBP3Q9H6Z4 567 aaPredicted RBP12.16□□□□□ -0.46
LSM1-203ENST00000520755 A0A0B4J2A0 478 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 SNRPGP15A8MWD9 76 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 RRHO14718 337 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 CREBL2O60519 120 aaPredicted RBP12.15□□□□□ -0.46
LSM1-203ENST00000520755 TSPAN9O75954 239 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 SPDEFO95238 335 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 KRASP01116 189 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 IL6RP08887 468 aaPredicted RBP12.15□□□□□ -0.46
LSM1-203ENST00000520755 OR9G9P0C7N8 305 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 LGALS7P47929 136 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 UBE2KP61086 200 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 SRPXP78539 464 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 SSBP2P81877 361 aaPredicted RBP12.15□□□□□ -0.46
LSM1-203ENST00000520755 FOXL1Q12952 345 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 C2orf68Q2NKX9 166 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 ARSJQ5FYB0 599 aaPredicted RBP12.15□□□□□ -0.46
LSM1-203ENST00000520755 NMSQ5H8A3 153 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 C11orf88Q6PI97 169 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 Q6ZS46 218 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 C5orf56Q8N8D9 126 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 TSNAXQ99598 290 aaKnown RBP12.15□□□□□ -0.46
LSM1-203ENST00000520755 PRSS22Q9GZN4 317 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 FBXL15Q9H469 300 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 ZNF702PQ9H963 129 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 TMEM140Q9NV12 185 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 SHPKQ9UHJ6 478 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 SIGLEC9Q9Y336 463 aa12.15□□□□□ -0.46
LSM1-203ENST00000520755 TRAV3A0A0B4J244 114 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 FGF16O43320 207 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 ADAP1O75689 374 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 KBTBD11O94819 623 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 HRASP01112 189 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 ZNF695Q8IW36 515 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 C12orf45Q8N5I9 185 aaPredicted RBP12.14□□□□□ -0.47
LSM1-203ENST00000520755 OR8H1Q8NGG4 311 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 OR2T6Q8NHC8 308 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 COQ8AQ8NI60 647 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 PHB2Q99623 299 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 OR51J1Q9H342 316 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 GPN1Q9HCN4 374 aaPredicted RBP12.14□□□□□ -0.47
LSM1-203ENST00000520755 KIAA1456Q9P272 454 aa12.14□□□□□ -0.47
LSM1-203ENST00000520755 METTL1Q9UBP6 276 aaKnown RBP12.14□□□□□ -0.47
LSM1-203ENST00000520755 MPTX1A8MV57 137 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 CCSO14618 274 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 AKR1C2P52895 323 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 PJVKQ0ZLH3 352 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 C5orf64Q2M2E5 130 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 VMA21Q3ZAQ7 101 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 AWAT1Q58HT5 328 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 Q6ZRM9 215 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 DMBX1Q8NFW5 382 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 LINC01006Q8NI28 216 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 TMEM167AQ8TBQ9 72 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 GPR146Q96CH1 333 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 RASL11BQ9BPW5 248 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 C16orf95Q9H693 158 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 BET1LQ9NYM9 111 aa12.13□□□□□ -0.47
LSM1-203ENST00000520755 DUXBA0A1W2PPF3 345 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 CLPSL1A2RUU4 121 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 OR2A4O95047 310 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 HOXB5P09067 269 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 MYOD1P15172 320 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 VDAC1P21796 283 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 ERVK-16P61578 105 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 PLGLAQ15195 96 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 TMEM95Q3KNT9 176 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 GGNBP1Q5YKI7 109 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 CADM3Q8N126 398 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 TEX45Q8NA69 505 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 LSM10Q969L4 123 aaKnown RBP12.12□□□□□ -0.47
LSM1-203ENST00000520755 OR2A7Q96R45 310 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 ZNF430Q9H8G1 570 aaPredicted RBP12.12□□□□□ -0.47
LSM1-203ENST00000520755 RNF114Q9Y508 228 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 MMP24Q9Y5R2 645 aa12.12□□□□□ -0.47
LSM1-203ENST00000520755 A0A1B0GVG6 124 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 HAX1O00165 279 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 UPK2O00526 184 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 FCN1O00602 326 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 VDAC2P45880 294 aaPredicted RBP12.11□□□□□ -0.47
LSM1-203ENST00000520755 OR2B8PP59922 312 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 NDPQ00604 133 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 PRSS8Q16651 343 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 C12orf54Q6X4T0 127 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 Q8N2B8 174 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 HSPB9Q9BQS6 159 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 NSG2Q9Y328 171 aa12.11□□□□□ -0.47
LSM1-203ENST00000520755 A0A1B0GUS0 222 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 CA2P00918 260 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 HLA-DRB1P01911 266 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 C10orf55Q5SWW7 151 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 H2BFWTQ7Z2G1 175 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 PPP1R27Q86WC6 154 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 FAM219AQ8IW50 185 aa12.1□□□□□ -0.47
LSM1-203ENST00000520755 UXS1Q8NBZ7 420 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms