RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TXNDC17Q9BRA2 123 aa10.74□□□□□ -0.69
USP53-209ENST00000514665 PSMG3Q9BT73 122 aaPredicted RBP10.74□□□□□ -0.69
USP53-209ENST00000514665 THADAQ6YHU6 1953 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 SRP14P37108 136 aaKnown RBP10.73□□□□□ -0.69
USP53-209ENST00000514665 OR8A1Q8NGG7 326 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 NABP2Q9BQ15 211 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 PLSCR2Q9NRY7 297 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 CEP350Q5VT06 3117 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 MYLKQ15746 1914 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 A8MWL6 223 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 TFF1P04155 84 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 SELENOTP62341 195 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 SLC35E4Q6ICL7 350 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 NPIPB3Q92617 1050 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 EAF1Q96JC9 268 aaPredicted RBP10.73□□□□□ -0.69
USP53-209ENST00000514665 MRPL18Q9H0U6 180 aaKnown RBP10.73□□□□□ -0.69
USP53-209ENST00000514665 IDI2-AS1Q9NZ38 188 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 HIGD1AQ9Y241 93 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 FAM208BQ5VWN6 2430 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 TMEM250H0YL14 139 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 TFF3Q07654 80 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 LOXL4Q96JB6 756 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 SSBP3Q9BWW4 388 aaPredicted RBP10.73□□□□□ -0.69
USP53-209ENST00000514665 CBY1Q9Y3M2 126 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 LOC102723996A0A087X1L8 192 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 C8orf88P0DMB2 117 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 ZNF788Q6ZQV5 615 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 ZIC4Q8N9L1 334 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 LILRB1Q8NHL6 650 aaPredicted RBP10.73□□□□□ -0.69
USP53-209ENST00000514665 PLPPR1Q8TBJ4 325 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 GGACTQ9BVM4 153 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 UBTD1Q9HAC8 227 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 DNAJC4Q9NNZ3 241 aa10.73□□□□□ -0.69
USP53-209ENST00000514665 ZNF716A6NP11 495 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 CCL1P22362 96 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 CBLN1P23435 193 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 CTSSP25774 331 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 DDTP30046 118 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 MC5RP33032 325 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 SUPT4H1P63272 117 aaKnown RBP10.72□□□□□ -0.69
USP53-209ENST00000514665 FAM27E3Q08E93 113 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 STPG3Q8N7X2 389 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 MAP1LC3CQ9BXW4 147 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 METTL1Q9UBP6 276 aaKnown RBP10.72□□□□□ -0.69
USP53-209ENST00000514665 PQLC2LA1A4F0 135 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 ABLIM2Q6H8Q1 611 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 ACP7Q6ZNF0 438 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 DOLPP1Q86YN1 238 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 MMD2Q8IY49 270 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 FAM117AQ9C073 453 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 ZNF430Q9H8G1 570 aaPredicted RBP10.72□□□□□ -0.69
USP53-209ENST00000514665 NOTCH2Q04721 2471 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 NOTCH4Q99466 2003 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 IGHV3-35A0A0C4DH35 117 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 LOC389332A0A1B0GUA5 103 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 CCL20P78556 96 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 PLAURQ03405 335 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 C5orf24Q7Z6I8 188 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 SNRNP40Q96DI7 357 aaKnown RBP10.72□□□□□ -0.69
USP53-209ENST00000514665 NPCDR1Q9BY65 106 aa10.72□□□□□ -0.69
USP53-209ENST00000514665 LRRC75BQ2VPJ9 315 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 PEAR1Q5VY43 1037 aaPredicted RBP10.71□□□□□ -0.69
USP53-209ENST00000514665 MUC15Q8N387 334 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 SPSB4Q96A44 273 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 ACACBO00763 2458 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 IGLV3-32A0A0A0MS00 114 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 PINLYPA6NC86 204 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 CORTO00230 105 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 DLL1O00548 723 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 CA2P00918 260 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 MT-ND6P03923 174 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 CD55P08174 381 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 FAM166AQ6J272 317 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 SSX8Q7RTT4 187 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 GBGT1Q8N5D6 347 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 FAM216BQ8N7L0 139 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 TMEM116Q8NCL8 245 aa10.71□□□□□ -0.69
USP53-209ENST00000514665 PTPRQQ9UMZ3 2332 aa10.71□□□□□ -0.7
USP53-209ENST00000514665 F8VVB4 439 aa10.71□□□□□ -0.7
USP53-209ENST00000514665 F8VWA3 439 aa10.71□□□□□ -0.7
USP53-209ENST00000514665 GCHFRP30047 84 aa10.71□□□□□ -0.7
USP53-209ENST00000514665 CD81P60033 236 aa10.71□□□□□ -0.7
USP53-209ENST00000514665 ARF6P62330 175 aa10.71□□□□□ -0.7
USP53-209ENST00000514665 ZDHHC8Q9ULC8 765 aa10.71□□□□□ -0.7
USP53-209ENST00000514665 J3QR89 54 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 LDLRAD4O15165 306 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 SRIP30626 198 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 LHX2P50458 406 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 C19orf35Q6ZS72 473 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 GRAMD2BQ96HH9 432 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 CACNA1AO00555 2505 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 HTN1P15515 57 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 IGHV1-2P23083 117 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 GPR6P46095 362 aaPredicted RBP10.7□□□□□ -0.7
USP53-209ENST00000514665 TNFSF10P50591 281 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 RPL30P62888 115 aaKnown RBP10.7□□□□□ -0.7
USP53-209ENST00000514665 PAFAH1B2P68402 229 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 ZNF525Q8N782 197 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 WDR87Q6ZQQ6 2873 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 SLC17A3O00476 420 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms