RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 LYRM2Q9NU23 88 aaPredicted RBP12.93□□□□□ -0.34
NUP54-214ENST00000514307 FOXA2Q9Y261 457 aaPredicted RBP12.93□□□□□ -0.34
NUP54-214ENST00000514307 ZNF257Q9Y2Q1 563 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 HILPDAQ9Y5L2 63 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 NAV2Q8IVL1 2488 aa12.93□□□□□ -0.34
NUP54-214ENST00000514307 NPFFO15130 113 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 IFNA7P01567 189 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 OR9G9P0C7N8 305 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 PRB3Q04118 309 aaPredicted RBP12.92□□□□□ -0.34
NUP54-214ENST00000514307 BAXQ07812 192 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 SSX2Q16385 188 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 PDLIM3Q53GG5 364 aaPredicted RBP12.92□□□□□ -0.34
NUP54-214ENST00000514307 ZNF767PQ75MW2 155 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 PUSL1Q8N0Z8 303 aaKnown RBP12.92□□□□□ -0.34
NUP54-214ENST00000514307 TMEM167AQ8TBQ9 72 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 QTRT1Q9BXR0 403 aaKnown RBP12.92□□□□□ -0.34
NUP54-214ENST00000514307 HIF1ANQ9NWT6 349 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 DSCAML1Q8TD84 2053 aa12.92□□□□□ -0.34
NUP54-214ENST00000514307 YLPM1P49750 1951 aaKnown RBP12.91□□□□□ -0.34
NUP54-214ENST00000514307 BORCS7-ASMTA0A0B4J1R7 106 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 CENPVL3A0A0U1RRI6 287 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 A0A1W2PRD5 423 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 A0A1W2PRF3 423 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 A0A1W2PRM7 423 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 SRRM4A7MD48 611 aaKnown RBP12.91□□□□□ -0.34
NUP54-214ENST00000514307 RNF223E7ERA6 249 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 TIMM23O14925 209 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 JTBO76095 146 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 FAM106CPP0CH98 169 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 PAX9P55771 341 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 ATP5IP56385 69 aaPredicted RBP12.91□□□□□ -0.34
NUP54-214ENST00000514307 BPIFB3P59826 476 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 HABP2Q14520 560 aaPredicted RBP12.91□□□□□ -0.34
NUP54-214ENST00000514307 STX12Q86Y82 276 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 THNSL2Q86YJ6 484 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 PDZD9Q8IXQ8 264 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 TMEM252Q8N6L7 170 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 OR2T10Q8NGZ9 312 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 DTD1Q8TEA8 209 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 COMMD5Q9GZQ3 224 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 C11orf1Q9H5F2 150 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 TMEM14BQ9NUH8 114 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 OR51B2Q9Y5P1 312 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 MAST4O15021 2626 aa12.91□□□□□ -0.34
NUP54-214ENST00000514307 IGHV1-69DA0A0B4J2H0 117 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 A0A1W2PPI3 338 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 FAM24AA6NFZ4 105 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 C15orf61A6NNL5 157 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 KCNAB3O43448 404 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 NXPH3O95157 252 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 MOSP00540 346 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 IGHV1-69P01742 117 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 MAS1LP35410 378 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 RPL8P62917 257 aaKnown RBP12.9□□□□□ -0.34
NUP54-214ENST00000514307 UBA52P62987 128 aaKnown RBP12.9□□□□□ -0.34
NUP54-214ENST00000514307 EIF5AL1Q6IS14 154 aaKnown RBP12.9□□□□□ -0.34
NUP54-214ENST00000514307 TEX261Q6UWH6 196 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 LHFPL4Q7Z7J7 247 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 MRPL41Q8IXM3 137 aaKnown RBP12.9□□□□□ -0.34
NUP54-214ENST00000514307 OR5B3Q8NH48 314 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 ZNF471Q9BX82 626 aaPredicted RBP12.9□□□□□ -0.34
NUP54-214ENST00000514307 HEYLQ9NQ87 328 aaPredicted RBP12.9□□□□□ -0.34
NUP54-214ENST00000514307 STRAPQ9Y3F4 350 aaKnown RBP12.9□□□□□ -0.34
NUP54-214ENST00000514307 U3KQ87 197 aa12.9□□□□□ -0.34
NUP54-214ENST00000514307 IGHV3-72A0A0B4J1Y9 119 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 RGS13O14921 159 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 ACTL6BO94805 426 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 SPDEFO95238 335 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 TGFAP01135 160 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 SAA1P0DJI8 122 aaPredicted RBP12.89□□□□□ -0.35
NUP54-214ENST00000514307 SULT1A1P50225 295 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 HBG1P69891 147 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 HBG2P69892 147 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 IFITM2Q01629 132 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 EWSR1Q01844 656 aaKnown RBP eCLIP12.89□□□□□ -0.35
NUP54-214ENST00000514307 PSG5Q15238 335 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 SPANXN5Q5MJ07 72 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 CYB5R2Q6BCY4 276 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 MMD2Q8IY49 270 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 OR1L8Q8NGR8 309 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 Q96MF0 132 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 FOXC2Q99958 501 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 UNC79Q9P2D8 2635 aa12.89□□□□□ -0.35
NUP54-214ENST00000514307 A0A096LNT2 108 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 TRAV3A0A0B4J244 114 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 TEX50A0A1B0GTY4 177 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 MSGN1A6NI15 193 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 SNRNP70P08621 437 aaKnown RBP12.88□□□□□ -0.35
NUP54-214ENST00000514307 IAPPP10997 89 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 TPT1P13693 172 aaKnown RBP12.88□□□□□ -0.35
NUP54-214ENST00000514307 F2RL1P55085 397 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 OR2B8PP59922 312 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 NHLH2Q02577 135 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 ATP6V1FQ16864 119 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 ZNF680Q8NEM1 530 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 OR1S2Q8NGQ3 325 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 C1RLQ9NZP8 487 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 KIAA1456Q9P272 454 aa12.88□□□□□ -0.35
NUP54-214ENST00000514307 PAIP2BQ9ULR5 123 aaKnown RBP12.88□□□□□ -0.35
NUP54-214ENST00000514307 TCF19Q9Y242 345 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms