RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 OR51A2Q8NGJ7 313 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 OR10X1Q8NGY0 326 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 OR52N1Q8NH53 320 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 OR4A16Q8NH70 328 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 OR9G1Q8NH87 305 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 RFESDQ8TAC1 157 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 C17orf50Q8WW18 174 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 APH1BQ8WW43 257 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 THRSPQ92748 146 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 GHSRQ92847 366 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 MYDGFQ969H8 173 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 ARL11Q969Q4 196 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 SMIM19Q96E16 107 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 ZNF184Q99676 751 aaPredicted RBP2.73□□□□□ -1.97
NUP54-212ENST00000513248 C16orf95Q9H693 158 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 RANBP3Q9H6Z4 567 aaPredicted RBP2.73□□□□□ -1.97
NUP54-212ENST00000513248 CALYQ9NYX4 217 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 IDI2-AS1Q9NZ38 188 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 KCNIP1Q9NZI2 227 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 GNG12Q9UBI6 72 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 TRAPPC2LQ9UL33 140 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 FOXJ3Q9UPW0 622 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 SIGLEC9Q9Y336 463 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 TPRKBQ9Y3C4 175 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 HSPE1-MOB4S4R3N1 261 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 MALRD1Q5VYJ5 2156 aa2.73□□□□□ -1.97
NUP54-212ENST00000513248 CUBNO60494 3623 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 KMT2CQ8NEZ4 4911 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 IGHV3-43A0A0B4J1X8 118 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 TRAV39A0A0B4J263 110 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 KBTBD11-OT1A0A1B0GTJ5 212 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 A0A1W2PPE3 182 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 TCRBV4S1A1TA0A5B7 111 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 A6NDX4 124 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 NCBP2LA6PVI3 153 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 BUB1B-PAK6H3BSN5 160 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 WBP4O75554 376 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 MMP23AO75900 390 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OPN1MWP04001 364 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 GAPDHP04406 335 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 GIG44P09565 113 aaPredicted RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 LIMS3P0CW19 117 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 LIMS4P0CW20 117 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OPN1MW2P0DN77 364 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OPN1MW3P0DN78 364 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 IGHV3-43DP0DP04 118 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 GZMHP20718 246 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 RANBP1P43487 201 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 KCNJ3P48549 501 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 CNN1P51911 297 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 DLX6P56179 175 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 WNT4P56705 351 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 MRPS15P82914 257 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 MADCAM1Q13477 382 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 KLF5Q13887 457 aaPredicted RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 MPV17LQ2QL34 196 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 ABCA11PQ4W5N1 156 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 ACSM3Q53FZ2 586 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 C6orf183Q5T699 404 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 GLT8D1Q68CQ7 371 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 XAF1Q6GPH4 301 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 Q6P435 159 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 GLIPR1L1Q6UWM5 242 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 HEPN1Q6WQI6 88 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 ZNF600Q6ZNG1 722 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 LINC00596Q86U02 117 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 DYNAPQ8N1N2 210 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 SUMF2Q8NBJ7 301 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OR4F17Q8NGA8 305 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OR4X2Q8NGF9 303 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OR51T1Q8NGJ9 327 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OR4K15Q8NH41 348 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 UBALD1Q8TB05 177 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 UFD1Q92890 307 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 LEAP2Q969E1 77 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 OR4F4Q96R69 305 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 ATP6V0BQ99437 205 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 CITED1Q99966 193 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 ZNF649Q9BS31 505 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 TMED9Q9BVK6 235 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 MND1Q9BWT6 205 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 CDCA4Q9BXL8 241 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 SELENOIQ9C0D9 397 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 CST11Q9H112 138 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 BANF2Q9H503 90 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 DCLRE1BQ9H816 532 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 PLGRKTQ9HBL7 147 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 ZNF286AQ9HBT8 521 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 SPACA1Q9HBV2 294 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 BIRC6Q9NR09 4857 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 CNOT2Q9NZN8 540 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 ABRACLQ9P1F3 81 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 DHRS4-AS1Q9P1J3 65 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 CLEC2DQ9UHP7 191 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 MGAT4AQ9UM21 535 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 PEX16Q9Y5Y5 336 aa2.72□□□□□ -1.97
NUP54-212ENST00000513248 YLPM1P49750 1951 aaKnown RBP2.72□□□□□ -1.97
NUP54-212ENST00000513248 SONP18583 2426 aaKnown RBP2.71□□□□□ -1.98
NUP54-212ENST00000513248 TRAV8-7A0A075B6U6 113 aa2.71□□□□□ -1.98
NUP54-212ENST00000513248 IGHV3-72A0A0B4J1Y9 119 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms