RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 CX3CL1P78423 397 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 PPP1R1AQ13522 171 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 FXYD3Q14802 87 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM268Q5VZI3 342 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 OR4A47Q6IF82 309 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 ZNF562Q6V9R5 426 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 C12orf54Q6X4T0 127 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 Q6ZS46 218 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 SLC25A42Q86VD7 318 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 MMD2Q8IY49 270 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 LGI3Q8N145 548 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 OR4A16Q8NH70 328 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 OR4A5Q8NH83 315 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 LINC01006Q8NI28 216 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 HSPB9Q9BQS6 159 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM222Q9H0R3 208 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 OR51J1Q9H342 316 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 C16orf95Q9H693 158 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 TPSG1Q9NRR2 321 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM140Q9NV12 185 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 NUDT15Q9NV35 164 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 LINC00527Q9UJ94 153 aa6.51□□□□□ -1.37
LIMCH1-206ENST00000505705 IGHV7-81A0A0B4J1V7 117 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 PIGBOS1A0A0B4J2F0 54 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM89A2RUT3 159 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 LINC01548A6NM66 108 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 AP4M1O00189 453 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 IGHG2P01859 326 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 OPN1MWP04001 364 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 CRYGBP07316 175 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 OPN1MW2P0DN77 364 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 OPN1MW3P0DN78 364 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 UCP1P25874 307 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 UBE2MP61081 183 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 RPL8P62917 257 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 SLC35B1P78383 322 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 SRPXP78539 464 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM267Q0VDI3 215 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 PJVKQ0ZLH3 352 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 DCTN2Q13561 401 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM187Q14656 261 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 PRSS8Q16651 343 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 ECSCRQ19T08 205 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM95Q3KNT9 176 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 LCE2AQ5TA79 106 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 NRARPQ7Z6K4 114 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 SELENOHQ8IZQ5 122 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 PUSL1Q8N0Z8 303 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 UXS1Q8NBZ7 420 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 COQ8AQ8NI60 647 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 GRPEL2Q8TAA5 225 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM167AQ8TBQ9 72 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 GLYATL2Q8WU03 294 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 CHPT1Q8WUD6 406 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 RBPMSQ93062 196 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 GALNT14Q96FL9 552 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 NOL4LQ96MY1 436 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 FAM103A1Q9BTL3 118 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 PDCD10Q9BUL8 212 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 GON7Q9BXV9 100 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 COMMD5Q9GZQ3 224 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 ZNF430Q9H8G1 570 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 PALMDQ9NP74 551 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 BET1LQ9NYM9 111 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 PRR13Q9NZ81 148 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 NSG2Q9Y328 171 aa6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 TEP1Q99973 2627 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 NSD1Q96L73 2696 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-206ENST00000505705 C9orf170A2RU37 121 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 PSMB11A5LHX3 300 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 INMT-MINDY4F8WBC2 141 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 UPK2O00526 184 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 ATP6V0E1O15342 81 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 CDS2O95674 445 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 DHFRP00374 187 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 IGKV1-39P01597 117 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 IGKV1D-39P04432 117 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 OR9G9P0C7N8 305 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 HLA-GP17693 338 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 MAS1LP35410 378 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 RPL27AP46776 148 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 SUPT4H1P63272 117 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 AWAT1Q58HT5 328 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 UNQ5815/PRO19632Q6UWF5 114 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 LYG2Q86SG7 212 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 Q8N2B8 174 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 STPG2Q8N412 459 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 KLHDC1Q8N7A1 406 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 C3orf56Q8N813 242 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 DUSP18Q8NEJ0 188 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 ARPC1AQ92747 370 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 SEC22AQ96IW7 307 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 TMEM56Q96MV1 263 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 FYTTD1Q96QD9 318 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 HINT2Q9BX68 163 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 ALX4Q9H161 411 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 ZNF355PQ9NSJ1 428 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 FKBP11Q9NYL4 201 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 PRNDQ9UKY0 176 aa6.49□□□□□ -1.37
LIMCH1-206ENST00000505705 OR51B2Q9Y5P1 312 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms