RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 WDR89Q96FK6 387 aaPredicted RBP12.32□□□□□ -0.44
VIM-208ENST00000497849 GGTLC1Q9BX51 225 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 WASHC3Q9Y3C0 194 aa12.32□□□□□ -0.44
VIM-208ENST00000497849 CA11O75493 328 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 NDUFB8O95169 186 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 GLAP06280 429 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 PTHLHP12272 177 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 KCNIP1Q9NZI2 227 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 PIPOXQ9P0Z9 390 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 EXTL2Q9UBQ6 330 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 HSF4Q9ULV5 492 aa12.31□□□□□ -0.44
VIM-208ENST00000497849 MSGN1A6NI15 193 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 BMPR1BO00238 502 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 MFNGO00587 321 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 RAB29O14966 203 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 MED14OSP0DP75 135 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 HIST1H1DP16402 221 aaKnown RBP12.3□□□□□ -0.44
VIM-208ENST00000497849 ATF4P18848 351 aaPredicted RBP12.3□□□□□ -0.44
VIM-208ENST00000497849 KIR2DS2P43631 304 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 SETD6Q8TBK2 473 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 DYNLRB2Q8TF09 96 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 SNAPC3Q92966 411 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 S100A16Q96FQ6 103 aaKnown RBP12.3□□□□□ -0.44
VIM-208ENST00000497849 USMG5Q96IX5 58 aa12.3□□□□□ -0.44
VIM-208ENST00000497849 CHMP1AQ9HD42 196 aaPredicted RBP12.3□□□□□ -0.44
VIM-208ENST00000497849 LOC102724200A0A096LPH7 203 aaPredicted RBP12.29□□□□□ -0.44
VIM-208ENST00000497849 SPDEFO95238 335 aa12.29□□□□□ -0.44
VIM-208ENST00000497849 IGKV1-16P04430 117 aa12.29□□□□□ -0.44
VIM-208ENST00000497849 PTBP1P26599 531 aaKnown RBP eCLIP12.29□□□□□ -0.44
VIM-208ENST00000497849 PHLDA1Q8WV24 401 aaPredicted RBP12.29□□□□□ -0.44
VIM-208ENST00000497849 BORCS5Q969J3 196 aa12.29□□□□□ -0.44
VIM-208ENST00000497849 GALMQ96C23 342 aa12.29□□□□□ -0.44
VIM-208ENST00000497849 ABHD14BQ96IU4 210 aa12.29□□□□□ -0.44
VIM-208ENST00000497849 CMSS1Q9BQ75 279 aaKnown RBP12.29□□□□□ -0.44
VIM-208ENST00000497849 SOSTQ9BQB4 213 aa12.29□□□□□ -0.44
VIM-208ENST00000497849 V9GYH0 126 aa12.29□□□□□ -0.44
VIM-208ENST00000497849 TMEM235A6NFC5 223 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 J3QRK9 145 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 PROP1O75360 226 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 PPP5CP53041 499 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 LINC00205P59089 165 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 PJVKQ0ZLH3 352 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 ARFRP1Q13795 201 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 IL18Q14116 193 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 HMGN3Q15651 99 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 SLC16A13Q7RTY0 426 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 NUDCD2Q8WVJ2 157 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 MAFIPQ8WZ33 124 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 TSNAXQ99598 290 aaKnown RBP12.28□□□□□ -0.44
VIM-208ENST00000497849 KRTAP4-5Q9BYR2 181 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 DIABLOQ9NR28 239 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 RABL2AQ9UBK7 228 aaPredicted RBP12.28□□□□□ -0.44
VIM-208ENST00000497849 ZNF230Q9UIE0 474 aaPredicted RBP12.28□□□□□ -0.44
VIM-208ENST00000497849 RABL2BQ9UNT1 228 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 MRPS7Q9Y2R9 242 aaKnown RBP12.28□□□□□ -0.44
VIM-208ENST00000497849 SELENOKQ9Y6D0 94 aa12.28□□□□□ -0.44
VIM-208ENST00000497849 A0A1B0GVY2 172 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 C2orf70A6NJV1 201 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 XRCC3O43542 346 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 SSX5O60225 188 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 NAPSAO96009 420 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 FCER2P06734 321 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 CD3GP09693 182 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 FOLR2P14207 255 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 BMI1P35226 326 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 TAS2R20P59543 309 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 PYDC2Q56P42 97 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 DRAXINQ8NBI3 349 aaPredicted RBP12.27□□□□□ -0.45
VIM-208ENST00000497849 TMEM68Q96MH6 324 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 AGMATQ9BSE5 352 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 AUNIPQ9H7T9 357 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 COA4Q9NYJ1 87 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 TECRQ9NZ01 308 aaKnown RBP12.27□□□□□ -0.45
VIM-208ENST00000497849 TP53TG1Q9Y2A0 90 aa12.27□□□□□ -0.45
VIM-208ENST00000497849 PKD1P98161 4303 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 A0A0A6YYH2 397 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 MEIS3P1A6NDR6 274 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 A6NJ64 397 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 SPRY2O43597 315 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 SCGNO76038 276 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 LGALS7P47929 136 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 RPS16P62249 146 aaKnown RBP12.26□□□□□ -0.45
VIM-208ENST00000497849 ZNF79Q15937 498 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 TMEM69Q5SWH9 247 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 GDPD1Q8N9F7 314 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 SRRQ9GZT4 340 aa12.26□□□□□ -0.45
VIM-208ENST00000497849 IGKV1D-8A0A087WSZ0 117 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 IGLV2-23P01705 113 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 HLA-DQB1P01920 261 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 CRYGBP07316 175 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 APELAP0DMC3 54 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 DEFB135Q30KP9 77 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 HACD4Q5VWC8 232 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 ZNF880Q6PDB4 577 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 Q6ZWC4 215 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 SNX29P2Q8IUI4 249 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 TMEM61Q8N0U2 210 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 ZNF383Q8NA42 475 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 C15orf40Q8WUR7 153 aa12.25□□□□□ -0.45
VIM-208ENST00000497849 IL1F10Q8WWZ1 152 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms