RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 YPEL4Q96NS1 127 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 MEIS3Q99687 375 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 SSBP3Q9BWW4 388 aaPredicted RBP3.36□□□□□ -1.87
BRCA1-220ENST00000492859 TMEM45AQ9NWC5 275 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 CLCF1Q9UBD9 225 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 UQCR10Q9UDW1 63 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 PCTPQ9UKL6 214 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 NEUROG3Q9Y4Z2 214 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 RPRD2Q5VT52 1461 aaKnown RBP3.36□□□□□ -1.87
BRCA1-220ENST00000492859 DYSFO75923 2080 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 MYO10Q9HD67 2058 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 MAPKBP1O60336 1514 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 DIP2BQ9P265 1576 aa3.36□□□□□ -1.87
BRCA1-220ENST00000492859 TNRC6AQ8NDV7 1962 aaKnown RBP3.36□□□□□ -1.87
BRCA1-220ENST00000492859 MADDQ8WXG6 1647 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 TRBV19A0A075B6N1 114 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 NXPH3O95157 252 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 CGAP01215 116 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 SMIM10L2AP0DMW4 78 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 SMIM10L2BP0DMW5 78 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 IFITM1P13164 125 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 OPRK1P41145 380 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 NMUP48645 174 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 FOXA3P55318 350 aaPredicted RBP3.35□□□□□ -1.87
BRCA1-220ENST00000492859 DAD1P61803 113 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 FKBP1AP62942 108 aaKnown RBP3.35□□□□□ -1.87
BRCA1-220ENST00000492859 PLGLB1Q02325 96 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 VMA21Q3ZAQ7 101 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 COA6Q5JTJ3 125 aaKnown RBP3.35□□□□□ -1.87
BRCA1-220ENST00000492859 ATP1A1-AS1Q5TC04 95 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 CEACAM19Q7Z692 300 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 LRP11Q86VZ4 500 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 KCNRGQ8N5I3 272 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 C3orf22Q8N5N4 141 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 C15orf40Q8WUR7 153 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 RTN4IP1Q8WWV3 396 aaPredicted RBP3.35□□□□□ -1.87
BRCA1-220ENST00000492859 CCL17Q92583 94 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 FGF14Q92915 247 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 BORCS8Q96FH0 119 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 PRSS27Q9BQR3 290 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 SNRNP25Q9BV90 132 aaKnown RBP3.35□□□□□ -1.87
BRCA1-220ENST00000492859 OTORQ9NRC9 128 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 LAMTOR3Q9UHA4 124 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 KIF26AQ9ULI4 1882 aaPredicted RBP3.35□□□□□ -1.87
BRCA1-220ENST00000492859 PPRC1Q5VV67 1664 aaKnown RBP3.35□□□□□ -1.87
BRCA1-220ENST00000492859 ADGBQ8N7X0 1667 aa3.35□□□□□ -1.87
BRCA1-220ENST00000492859 ATP10BO94823 1461 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 SCN2AQ99250 2005 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 ARAP3Q8WWN8 1544 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 IGLC7A0M8Q6 106 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 OR51F1A6NGY5 319 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 F5H5P2 479 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 K7EP34 96 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 TYROBPO43914 113 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BKO60814 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HRASP01112 189 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 KRASP01116 189 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 PTHP01270 115 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 MT-ATP8P03928 68 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BJP06899 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BOP23527 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 NFYBP25208 207 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 CRYBB3P26998 211 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BBP33778 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 RBMXP38159 391 aaKnown RBP3.34□□□□□ -1.87
BRCA1-220ENST00000492859 GFERP55789 205 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BDP58876 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HERV-K104P61576 105 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BCP62807 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HES1Q14469 280 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST2H2BEQ16778 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 ZNF260Q3ZCT1 412 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.34□□□□□ -1.87
BRCA1-220ENST00000492859 FAM222AQ5U5X8 452 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 GFI1BQ5VTD9 330 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 UNQ9165/PRO28630Q6UXU0 137 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HEPN1Q6WQI6 88 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 SSX8Q7RTT4 187 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 ATP5L2Q7Z4Y8 100 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 PRR15Q8IV56 129 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 ZFP62Q8NB50 900 aaPredicted RBP3.34□□□□□ -1.87
BRCA1-220ENST00000492859 OR4A5Q8NH83 315 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 TMEM255BQ8WV15 326 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BHQ93079 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 ELSPBP1Q96BH3 223 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 FXYD5Q96DB9 178 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 MYEOVQ96EZ4 313 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 DPH3Q96FX2 82 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 GPX7Q96SL4 187 aaPredicted RBP3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BNQ99877 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 HIST1H2BMQ99879 126 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 MRPL20Q9BYC9 149 aaKnown RBP3.34□□□□□ -1.87
BRCA1-220ENST00000492859 SLIRPQ9GZT3 109 aaKnown RBP3.34□□□□□ -1.87
BRCA1-220ENST00000492859 BANF2Q9H503 90 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 PLEKHA3Q9HB20 300 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 ANAPC10Q9UM13 185 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 MPC1Q9Y5U8 109 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 SBF2Q86WG5 1849 aa3.34□□□□□ -1.87
BRCA1-220ENST00000492859 TARBP1Q13395 1621 aaKnown RBP3.34□□□□□ -1.87
BRCA1-220ENST00000492859 IQGAP3Q86VI3 1631 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms