RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 FBXL7Q9UJT9 491 aa9.32□□□□□ -0.92
CPSF3-204ENST00000489403 ZNF257Q9Y2Q1 563 aa9.32□□□□□ -0.92
CPSF3-204ENST00000489403 MRPS7Q9Y2R9 242 aaKnown RBP9.32□□□□□ -0.92
CPSF3-204ENST00000489403 OR2W1Q9Y3N9 320 aa9.32□□□□□ -0.92
CPSF3-204ENST00000489403 SELENOKQ9Y6D0 94 aa9.32□□□□□ -0.92
CPSF3-204ENST00000489403 A0A1B0GW64 132 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 SMIM30A4D0T7 59 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 ERICH4A6NGS2 130 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 NPIPB5A8MRT5 1133 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 KBTBD11O94819 623 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 IL6RP08887 468 aaPredicted RBP9.31□□□□□ -0.92
CPSF3-204ENST00000489403 RPL27AP46776 148 aaKnown RBP9.31□□□□□ -0.92
CPSF3-204ENST00000489403 EIF4EBP1Q13541 118 aaPredicted RBP9.31□□□□□ -0.92
CPSF3-204ENST00000489403 ARL6IP1Q15041 203 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 CDNFQ49AH0 187 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 PUSL1Q8N0Z8 303 aaKnown RBP9.31□□□□□ -0.92
CPSF3-204ENST00000489403 OR4S2Q8NH73 311 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 VSTM2AQ8TAG5 236 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 TMEM167AQ8TBQ9 72 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 FANCD2OSQ96PS1 177 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 OR2A7Q96R45 310 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 ST6GALNAC5Q9BVH7 336 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 NDUFB11Q9NX14 153 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 TECRQ9NZ01 308 aaKnown RBP9.31□□□□□ -0.92
CPSF3-204ENST00000489403 S4R3C0 116 aa9.31□□□□□ -0.92
CPSF3-204ENST00000489403 TRDV1A0A1B0GX56 115 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 TMEM213A2RRL7 107 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 SLC22A5O76082 557 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 NDUFB8O95169 186 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 CRYGCP07315 174 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 CTXN2P0C2S0 81 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 ZNF735P0CB33 412 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 AREGP15514 252 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 CBLN1P23435 193 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 ARL3P36405 182 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 BRWD1-AS2P59051 145 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 HACD4Q5VWC8 232 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 C22orf42Q6IC83 251 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 CLEC19AQ6UXS0 136 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 GPHB5Q86YW7 130 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 TMEM61Q8N0U2 210 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 NUDCD2Q8WVJ2 157 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 TCTEX1D2Q8WW35 142 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 FYTTD1Q96QD9 318 aaKnown RBP9.3□□□□□ -0.92
CPSF3-204ENST00000489403 SLC2A9Q9NRM0 540 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 MLXQ9UH92 298 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 SPATA2Q9UM82 520 aa9.3□□□□□ -0.92
CPSF3-204ENST00000489403 DPPA5A6NC42 116 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 TMEM235A6NFC5 223 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 A8MWP6 167 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 MYOD1P15172 320 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 CTRB1P17538 263 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 PSMB6P28072 239 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 MAS1LP35410 378 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 KLK9Q2XQG4 91 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 ZNF57Q68EA5 555 aaPredicted RBP9.29□□□□□ -0.92
CPSF3-204ENST00000489403 CTRB2Q6GPI1 263 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 CNIH2Q6PI25 160 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 SLC16A13Q7RTY0 426 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 MFSD4AQ8N468 514 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 EEF1AKMT3Q96AZ1 226 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 GPHA2Q96T91 129 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 HSD17B10Q99714 261 aaKnown RBP9.29□□□□□ -0.92
CPSF3-204ENST00000489403 DCSTAMPQ9H295 470 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 KLK9Q9UKQ9 250 aa9.29□□□□□ -0.92
CPSF3-204ENST00000489403 CGB1A6NKQ9 187 aa9.28□□□□□ -0.92
CPSF3-204ENST00000489403 SSX5O60225 188 aa9.28□□□□□ -0.92
CPSF3-204ENST00000489403 REG1AP05451 166 aa9.28□□□□□ -0.92
CPSF3-204ENST00000489403 GALP22466 123 aa9.28□□□□□ -0.92
CPSF3-204ENST00000489403 SSX9Q7RTT3 188 aa9.28□□□□□ -0.92
CPSF3-204ENST00000489403 TAS2R8Q9NYW2 309 aa9.28□□□□□ -0.92
CPSF3-204ENST00000489403 ANXA10Q9UJ72 324 aa9.28□□□□□ -0.92
CPSF3-204ENST00000489403 IGLV11-55A0A075B6I3 123 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 ZNF320A2RRD8 509 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 MFSD2BA6NFX1 497 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 NOTOA8MTQ0 251 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 SCAF4O95104 1147 aaKnown RBP9.27□□□□□ -0.93
CPSF3-204ENST00000489403 DHFRP00374 187 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 GNG2P59768 71 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 RPL8P62917 257 aaKnown RBP9.27□□□□□ -0.93
CPSF3-204ENST00000489403 FAM106AQ4KMX7 169 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 BTNL8Q6UX41 500 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 UNQ9165/PRO28630Q6UXU0 137 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 ZNF66Q6ZN08 573 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 UXS1Q8NBZ7 420 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 OR52B4Q8NGK2 314 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 CNBD2Q96M20 576 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 OVOL2Q9BRP0 275 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 GGTLC1Q9BX51 225 aa9.27□□□□□ -0.93
CPSF3-204ENST00000489403 LOC102724200A0A096LPH7 203 aaPredicted RBP9.26□□□□□ -0.93
CPSF3-204ENST00000489403 TNFSF12O43508 249 aa9.26□□□□□ -0.93
CPSF3-204ENST00000489403 HRASP01112 189 aa9.26□□□□□ -0.93
CPSF3-204ENST00000489403 HIST1H1BP16401 226 aaKnown RBP9.26□□□□□ -0.93
CPSF3-204ENST00000489403 HLA-GP17693 338 aa9.26□□□□□ -0.93
CPSF3-204ENST00000489403 TIMM50Q3ZCQ8 353 aa9.26□□□□□ -0.93
CPSF3-204ENST00000489403 OR4A47Q6IF82 309 aa9.26□□□□□ -0.93
CPSF3-204ENST00000489403 LINC00476Q8WZB0 136 aa9.26□□□□□ -0.93
CPSF3-204ENST00000489403 TXNL4BQ9NX01 149 aaKnown RBP9.26□□□□□ -0.93
CPSF3-204ENST00000489403 BET1LQ9NYM9 111 aa9.26□□□□□ -0.93
CPSF3-204ENST00000489403 BLOC1S6Q9UL45 172 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms