RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 KCNG3Q8TAE7 436 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 NEUROG1Q92886 237 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 SIVA1O15304 175 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 MPIG6BO95866 241 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 HLA-DQA2P01906 255 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 IGHV1-2P23083 117 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 CKS1BP61024 79 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 RPL18Q07020 188 aaKnown RBP6.42□□□□□ -1.38
USP4-211ENST00000485450 CYYR1Q96J86 154 aa6.42□□□□□ -1.38
USP4-211ENST00000485450 H3BML4 177 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 ZNF93P35789 620 aaPredicted RBP6.41□□□□□ -1.38
USP4-211ENST00000485450 DYNLT3P51808 116 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 PIGPP57054 158 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 BAXQ07812 192 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 GTF3C1Q12789 2109 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 VAMP3Q15836 100 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 SP6Q3SY56 376 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 OTPQ5XKR4 325 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 GLIPR1L1Q6UWM5 242 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 ODF3L1Q8IXM7 274 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 OR1B1Q8NGR6 318 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 OR52N5Q8NH56 324 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 MSI2Q96DH6 328 aaKnown RBP6.41□□□□□ -1.38
USP4-211ENST00000485450 SS18L2Q9UHA2 77 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 MYO18BQ8IUG5 2567 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 TRAV8-6A0A0B4J262 113 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 DUXBA0A1W2PPF3 345 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 CEBPZOSA8MTT3 80 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 IFNA1P01562 189 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 MSMO1Q15800 293 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 PHYHD1Q5SRE7 291 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 ABHD12BQ7Z5M8 362 aaPredicted RBP6.41□□□□□ -1.38
USP4-211ENST00000485450 TUSC5Q8IXB3 177 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 PNKDQ8N490 385 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 NUP37Q8NFH4 326 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 OR5B3Q8NH48 314 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 TMEM59Q9BXS4 323 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 GTSF1LQ9H1H1 148 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 PLEKHJ1Q9NW61 149 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 FBXL7Q9UJT9 491 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 IGLV1-36A0A0B4J1U3 117 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 TRAV34A0A0B4J273 112 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 FOXI3A8MTJ6 420 aaPredicted RBP6.41□□□□□ -1.38
USP4-211ENST00000485450 P2RY10O00398 339 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 OMGP23515 440 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 DAP3P51398 398 aaKnown RBP6.41□□□□□ -1.38
USP4-211ENST00000485450 ATP5J2P56134 94 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 YPEL3P61236 119 aaPredicted RBP6.41□□□□□ -1.38
USP4-211ENST00000485450 SMAGPQ0VAQ4 97 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 LRRC10Q5BKY1 277 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 MUC15Q8N387 334 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 KLHDC1Q8N7A1 406 aa6.41□□□□□ -1.38
USP4-211ENST00000485450 ADAT3Q96EY9 351 aaPredicted RBP6.41□□□□□ -1.38
USP4-211ENST00000485450 TLN1Q9Y490 2541 aaKnown RBP6.4□□□□□ -1.38
USP4-211ENST00000485450 A0A1W2PNR3 127 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 DIRC3C9JPN6 131 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 TMEM250H0YL14 139 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 HS3ST1O14792 307 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 SH2D1BO14796 132 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 CD1BP29016 333 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 ADMP35318 185 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 ZNF726P1Q15940 193 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 C11orf71Q6IPW1 123 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 OR5D14Q8NGL3 314 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 C1orf159Q96HA4 380 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 ABHD14BQ96IU4 210 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 ATP5SQ99766 215 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 HINT2Q9BX68 163 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 PSG8Q9UQ74 426 aa6.4□□□□□ -1.38
USP4-211ENST00000485450 OVOL3O00110 214 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 FSTL3O95633 263 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 GRNP28799 593 aaKnown RBP6.4□□□□□ -1.39
USP4-211ENST00000485450 RPL27P61353 136 aaKnown RBP6.4□□□□□ -1.39
USP4-211ENST00000485450 MRPS34P82930 218 aaKnown RBP6.4□□□□□ -1.39
USP4-211ENST00000485450 PSG9Q00887 426 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 RTN4IP1Q8WWV3 396 aaPredicted RBP6.4□□□□□ -1.39
USP4-211ENST00000485450 BANF2Q9H503 90 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 PATZ1Q9HBE1 687 aaKnown RBP6.4□□□□□ -1.39
USP4-211ENST00000485450 RPRMQ9NS64 109 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 THYN1Q9P016 225 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 PROCRQ9UNN8 238 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 FAM208BQ5VWN6 2430 aa6.4□□□□□ -1.39
USP4-211ENST00000485450 IGKV1D-8A0A087WSZ0 117 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 A0A0U1RQK1 487 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 SERF1AO75920 110 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 VENTXO95231 258 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 FOXL1Q12952 345 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 TCTEX1D4Q5JR98 221 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 SPATA31B1PQ5VZV4 182 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 RNF144BQ7Z419 303 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 DTX2Q86UW9 622 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 FOXN4Q96NZ1 517 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 NUDT14O95848 222 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 IGLV3-1P01715 115 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 CD99P14209 185 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 CLDN17P56750 224 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 MEF2BQ02080 365 aaPredicted RBP6.39□□□□□ -1.39
USP4-211ENST00000485450 TMEM267Q0VDI3 215 aaPredicted RBP6.39□□□□□ -1.39
USP4-211ENST00000485450 CEACAM21Q3KPI0 293 aa6.39□□□□□ -1.39
USP4-211ENST00000485450 LCN15Q6UWW0 184 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms