RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 LINC00527Q9UJ94 153 aa13.08□□□□□ -0.32
TRIM54-203ENST00000485306 C3orf85A0A1B0GTC6 90 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 H0Y980 276 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 DUS4LO95620 317 aaKnown RBP13.07□□□□□ -0.32
TRIM54-203ENST00000485306 RPL30P62888 115 aaKnown RBP13.07□□□□□ -0.32
TRIM54-203ENST00000485306 TEX38Q6PEX7 206 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 OR51H1Q8NH63 302 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 OR4S2Q8NH73 311 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 TMEM230Q96A57 120 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 MARVELD1Q9BSK0 173 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 PLSCR3Q9NRY6 295 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 FLVCR2Q9UPI3 526 aa13.07□□□□□ -0.32
TRIM54-203ENST00000485306 LINC01548A6NM66 108 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 NUDT19A8MXV4 375 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 INMT-MINDY4F8WBC2 141 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 H7C2Y5 167 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 IGLL1P15814 213 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 RPA2P15927 270 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 AKR1C4P17516 323 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 RPL23AP62750 156 aaKnown RBP13.06□□□□□ -0.32
TRIM54-203ENST00000485306 OXA1LQ15070 435 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 GLDNQ6ZMI3 551 aaPredicted RBP13.06□□□□□ -0.32
TRIM54-203ENST00000485306 SPAG16Q8N0X2 631 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 ADAD2Q8NCV1 583 aaKnown RBP13.06□□□□□ -0.32
TRIM54-203ENST00000485306 FLYWCH2Q96CP2 140 aaKnown RBP13.06□□□□□ -0.32
TRIM54-203ENST00000485306 RCC1LQ96I51 464 aaKnown RBP13.06□□□□□ -0.32
TRIM54-203ENST00000485306 AIFM2Q9BRQ8 373 aa13.06□□□□□ -0.32
TRIM54-203ENST00000485306 TRAV6A0A075B6T7 132 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 PRAF2O60831 178 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 FCGR3BO75015 233 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 DHFRP00374 187 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 HPRT1P00492 218 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 PRB2P02812 416 aaPredicted RBP13.05□□□□□ -0.32
TRIM54-203ENST00000485306 IL5P05113 134 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 LGALS7P47929 136 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 F2RL1P55085 397 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 SRPXP78539 464 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 TRIM16LQ309B1 348 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 TMEM177Q53S58 311 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 FAM71E2Q8N5Q1 922 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 OSR1Q8TAX0 266 aaPredicted RBP13.05□□□□□ -0.32
TRIM54-203ENST00000485306 PLEKHA2Q9HB19 425 aa13.05□□□□□ -0.32
TRIM54-203ENST00000485306 ATG12O94817 140 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 SFT2D2O95562 160 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 SERPINE2P07093 398 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 OR4E1P0C645 316 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 ANXA7P20073 488 aaKnown RBP13.04□□□□□ -0.32
TRIM54-203ENST00000485306 VDAC1P21796 283 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 UCP1P25874 307 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 LINC00205P59089 165 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 MMDQ15546 238 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 CXorf66Q5JRM2 361 aaPredicted RBP13.04□□□□□ -0.32
TRIM54-203ENST00000485306 GPHA2Q96T91 129 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 GPR61Q9BZJ8 451 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 TMEM222Q9H0R3 208 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 COMMD9Q9P000 198 aa13.04□□□□□ -0.32
TRIM54-203ENST00000485306 SPDEFO95238 335 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 HRASP01112 189 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 ELANEP08246 267 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 OR5AC1P0C628 307 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 BRWD1-AS2P59051 145 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 SUPT4H1P63272 117 aaKnown RBP13.03□□□□□ -0.32
TRIM54-203ENST00000485306 PPP1R1AQ13522 171 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 C4orf46Q504U0 113 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 LYG2Q86SG7 212 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 ZNF695Q8IW36 515 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 CADM3Q8N126 398 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 KLHL30-AS1Q8NEE0 82 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 MRAPQ8TCY5 172 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 IL22RA2Q969J5 263 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 RITA1Q96K30 269 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 TP53RKQ96S44 253 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 TSNAXQ99598 290 aaKnown RBP13.03□□□□□ -0.32
TRIM54-203ENST00000485306 GPN1Q9HCN4 374 aaPredicted RBP13.03□□□□□ -0.32
TRIM54-203ENST00000485306 KIAA1456Q9P272 454 aa13.03□□□□□ -0.32
TRIM54-203ENST00000485306 C9orf170A2RU37 121 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 CDS2O95674 445 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 CRYZL1O95825 349 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 HLA-AP01891 365 aaKnown RBP13.02□□□□□ -0.33
TRIM54-203ENST00000485306 IGKV1-16P04430 117 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 NQO2P16083 231 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 VAMP1P23763 118 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 MYCNOSP40205 109 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 LPAR6P43657 344 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 RPS16P62249 146 aaKnown RBP13.02□□□□□ -0.33
TRIM54-203ENST00000485306 DHRS2Q13268 280 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 FOXE3Q13461 319 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 TMEM187Q14656 261 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 ZNF585BQ52M93 769 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 C8orf86Q6ZUL3 223 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 MRPL41Q8IXM3 137 aaKnown RBP13.02□□□□□ -0.33
TRIM54-203ENST00000485306 LINC00482Q8N8I6 264 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 GLYATL2Q8WU03 294 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 TMEM56Q96MV1 263 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 MCRIP2Q9BUT9 160 aaKnown RBP13.02□□□□□ -0.33
TRIM54-203ENST00000485306 TMEM56-RWDD3S4R434 201 aa13.02□□□□□ -0.33
TRIM54-203ENST00000485306 A0A0B4J2A0 478 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 SHOXO15266 292 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 NBR2O15453 112 aa13.01□□□□□ -0.33
TRIM54-203ENST00000485306 IGF1P05019 195 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms