RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 REC114Q7Z4M0 266 aa14.98□□□□□ -0.01
CCM2-209ENST00000477605 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.98□□□□□ -0.01
CCM2-209ENST00000477605 DCTN5Q9BTE1 182 aa14.98□□□□□ -0.01
CCM2-209ENST00000477605 ZNF71Q9NQZ8 489 aaPredicted RBP14.98□□□□□ -0.01
CCM2-209ENST00000477605 ASPMQ8IZT6 3477 aa14.98□□□□□ -0.01
CCM2-209ENST00000477605 MKRN2OSH3BPM6 223 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 DDTP30046 118 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 CCKARP32238 428 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 EDDM3BP56851 147 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 LOXL3P58215 753 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 FZR1Q9UM11 496 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 PROCRQ9UNN8 238 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 MED13Q9UHV7 2174 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 HOXA4Q00056 320 aaPredicted RBP14.97□□□□□ -0.01
CCM2-209ENST00000477605 CST9LP1Q5W188 147 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 BHLHA15Q7RTS1 189 aaPredicted RBP14.97□□□□□ -0.01
CCM2-209ENST00000477605 OR2Z1Q8NG97 314 aa14.97□□□□□ -0.01
CCM2-209ENST00000477605 TRAV38-1A0A0B4J264 116 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 GZMBP10144 247 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 CCL11P51671 97 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 TMEM144Q7Z5S9 345 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 OR4S2Q8NH73 311 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 TMEM18Q96B42 140 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 C14orf144Q96I85 54 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 GGTLC1Q9BX51 225 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 IFI27L2Q9H2X8 130 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 NPVFQ9HCQ7 196 aa14.96□□□□□ -0.01
CCM2-209ENST00000477605 MAP1BP46821 2468 aaKnown RBP14.96□□□□□ -0.02
CCM2-209ENST00000477605 NDUFB4O95168 129 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 CGAP01215 116 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 EGR1P18146 543 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 GCSAMQ8N6F7 178 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 FDCSPQ8NFU4 85 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 Q8TCH9 128 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 DDB2Q92466 427 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 NOL4LQ96MY1 436 aaPredicted RBP14.96□□□□□ -0.02
CCM2-209ENST00000477605 MGST2Q99735 147 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 MS4A5Q9H3V2 200 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 DUSP13Q9UII6 198 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 FUT9Q9Y231 359 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 SLC25A15Q9Y619 301 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 PXMP4Q9Y6I8 212 aa14.96□□□□□ -0.02
CCM2-209ENST00000477605 FRYQ5TBA9 3013 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 FNDC10F2Z333 226 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 RRHO14718 337 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 CGB3P0DN86 165 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 CGB7P0DN87 165 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 ATP5G3P48201 142 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 LTC4SQ16873 150 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 GCSAMLQ5JQS6 135 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 TMEM37Q8WXS4 190 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 TMEM140Q9NV12 185 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 TCF19Q9Y242 345 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 LSM4Q9Y4Z0 139 aaKnown RBP14.95□□□□□ -0.02
CCM2-209ENST00000477605 EPG5Q9HCE0 2579 aa14.95□□□□□ -0.02
CCM2-209ENST00000477605 CHD3Q12873 2000 aaKnown RBP14.95□□□□□ -0.02
CCM2-209ENST00000477605 TNFSF13O75888 250 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 IGHV3-13P01766 116 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 CHRNA7P36544 502 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 C3orf36Q3SXR2 165 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 STARD4Q96DR4 205 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 ADTRPQ96IZ2 230 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 CALYQ9NYX4 217 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 TRAV9-1A0A075B6T8 112 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 MT-CO2P00403 227 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 IL3RAP26951 378 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 CNN1P51911 297 aaKnown RBP14.94□□□□□ -0.02
CCM2-209ENST00000477605 RPL15P61313 204 aaKnown RBP14.94□□□□□ -0.02
CCM2-209ENST00000477605 RAB31Q13636 194 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 FAM78BQ5VT40 261 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 SSX9Q7RTT3 188 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 SFRP2Q96HF1 295 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 FOXA2Q9Y261 457 aaPredicted RBP14.94□□□□□ -0.02
CCM2-209ENST00000477605 MSRB2Q9Y3D2 182 aa14.94□□□□□ -0.02
CCM2-209ENST00000477605 AKAP13Q12802 2813 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 A0A087X0M5 115 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 A0A1B0GX30 115 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 C15orf61A6NNL5 157 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 NKX2-8O15522 239 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 LHBP01229 141 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 CRYAAP02489 173 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 ARL14EPLP0DKL9 152 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 THBS3P49746 956 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 UBE2G2P60604 165 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 LBHQ53QV2 105 aaPredicted RBP14.93□□□□□ -0.02
CCM2-209ENST00000477605 RPL39P5Q59GN2 51 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 CORO2AQ92828 525 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 MEGF10Q96KG7 1140 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 DOCK7Q96N67 2140 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 PATZ1Q9HBE1 687 aaKnown RBP14.93□□□□□ -0.02
CCM2-209ENST00000477605 MDFIC2A0A1B0GVS7 189 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 C1QTNF9P0C862 333 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 DEFA4P12838 97 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 ZNF134P52741 427 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 SFXN3Q9BWM7 321 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 LY96Q9Y6Y9 160 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 ARL2-SNX15V9GYD0 113 aa14.93□□□□□ -0.02
CCM2-209ENST00000477605 KIAA2026Q5HYC2 2103 aa14.92□□□□□ -0.02
CCM2-209ENST00000477605 RPL29P47914 159 aaKnown RBP14.92□□□□□ -0.02
CCM2-209ENST00000477605 HSPE1P61604 102 aaKnown RBP14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms