RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 Q6P435 159 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 FAM216BQ8N7L0 139 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 A0A1W2PRD5 423 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 A0A1W2PRF3 423 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 A0A1W2PRM7 423 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 IGHG3P01860 377 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 NTF4P34130 210 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 MBNL2Q5VZF2 373 aaKnown RBP12.26□□□□□ -0.45
HDAC6-220ENST00000477528 SPNS3Q6ZMD2 512 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 PRR7Q8TB68 274 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 MMDQ15546 238 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 C5orf24Q7Z6I8 188 aa12.26□□□□□ -0.45
HDAC6-220ENST00000477528 METTL1Q9UBP6 276 aaKnown RBP12.26□□□□□ -0.45
HDAC6-220ENST00000477528 PSPNO60542 156 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 CA2P00918 260 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 MORN2Q502X0 79 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 OR4A47Q6IF82 309 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 ZNF343Q6P1L6 599 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 STPG3Q8N7X2 389 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 NOL4LQ96MY1 436 aaPredicted RBP12.25□□□□□ -0.45
HDAC6-220ENST00000477528 PRO1933Q9H354 126 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 TMPRSS3P57727 454 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 CYP2G1PQ6ZSU1 146 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 C19orf24Q9BVV8 132 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 ZNF430Q9H8G1 570 aaPredicted RBP12.25□□□□□ -0.45
HDAC6-220ENST00000477528 IGHV3-72A0A0B4J1Y9 119 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 H0Y8G0 127 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 VENTXO95231 258 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 TFF1P04155 84 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 OR5I1Q13606 314 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 VAMP8Q9BV40 100 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 HSPB7Q9UBY9 170 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 SERTM2A0A1B0GWG4 89 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 CORTO00230 105 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 SLC25A17O43808 307 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 APELAP0DMC3 54 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 CCL20P78556 96 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 OSR1Q8TAX0 266 aaPredicted RBP12.25□□□□□ -0.45
HDAC6-220ENST00000477528 RNF115Q9Y4L5 304 aa12.25□□□□□ -0.45
HDAC6-220ENST00000477528 FAM157AC9JC47 383 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 RBFOX2O43251 390 aaKnown RBP eCLIP12.24□□□□□ -0.45
HDAC6-220ENST00000477528 GNG7O60262 68 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 IER3P46695 156 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 RNFT1Q5M7Z0 435 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 ABHD17AQ96GS6 310 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 SNURFLB1AK76 121 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 NPIPB11E5RHQ5 1161 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 HYPMO75409 117 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 CDX1P47902 265 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-220ENST00000477528 RPL11P62913 178 aaKnown RBP12.24□□□□□ -0.45
HDAC6-220ENST00000477528 HERPUD1Q15011 391 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 LYPD6Q86Y78 171 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 ZNF383Q8NA42 475 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 STARD4Q96DR4 205 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 SRRM5B3KS81 715 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 MEF2CQ06413 473 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-220ENST00000477528 WDR25Q64LD2 544 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-220ENST00000477528 TMEM106BQ9NUM4 274 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 C1RLQ9NZP8 487 aa12.24□□□□□ -0.45
HDAC6-220ENST00000477528 IGHV1-69-2A0A0G2JMI3 117 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 C8orf88P0DMB2 117 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 CAMPP49913 170 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 HLA-DRB5Q30154 266 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 KLHDC1Q8N7A1 406 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 OR5AU1Q8NGC0 362 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 NABP2Q9BQ15 211 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 BARX1Q9HBU1 254 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-220ENST00000477528 ZNF785A8K8V0 405 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 B9A039 149 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 ZNF253O75346 499 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 IL6RP08887 468 aaPredicted RBP12.23□□□□□ -0.45
HDAC6-220ENST00000477528 AGAP20933 346 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 BRS3P32247 399 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 RTP5Q14D33 572 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 HS3ST6Q96QI5 342 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 MRPL37Q9BZE1 423 aaKnown RBP12.23□□□□□ -0.45
HDAC6-220ENST00000477528 PARD6AQ9NPB6 346 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 A0A1B0GW64 132 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 GCHFRP30047 84 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 DUTP33316 252 aaKnown RBP12.23□□□□□ -0.45
HDAC6-220ENST00000477528 LGALS7P47929 136 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 MRPL54Q6P161 138 aaKnown RBP12.23□□□□□ -0.45
HDAC6-220ENST00000477528 DNAJC4Q9NNZ3 241 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 ZNF407Q9C0G0 2248 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 IGKV1-5P01602 117 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 CCDC144NLQ6NUI1 221 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 SDF2L1Q9HCN8 221 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 LINC00312Q9Y6C7 94 aa12.23□□□□□ -0.45
HDAC6-220ENST00000477528 C17orf100A8MU93 164 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 HIST1H1EP10412 219 aaKnown RBP12.22□□□□□ -0.45
HDAC6-220ENST00000477528 HIST1H1BP16401 226 aaKnown RBP12.22□□□□□ -0.45
HDAC6-220ENST00000477528 TMEM11P17152 192 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 AMTP48728 403 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 BSPH1Q075Z2 132 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 AARDQ4LEZ3 155 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 MBD3L1Q8WWY6 194 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 RND2P52198 227 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 HCP5Q6MZN7 132 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 C20orf204Q6ZNR8 217 aa12.22□□□□□ -0.45
HDAC6-220ENST00000477528 IGHV3-21A0A0B4J1V1 117 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms