RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TSC22D2O75157 780 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 IGKV1-16P04430 117 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 OR9G9P0C7N8 305 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 HKR1P10072 659 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 CD1BP29016 333 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 DLX1P56177 255 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 SPCS3P61009 180 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 UBE2KP61086 200 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 RPS16P62249 146 aaKnown RBP10.37□□□□□ -0.75
VPS13D-205ENST00000473099 UBA52P62987 128 aaKnown RBP10.37□□□□□ -0.75
VPS13D-205ENST00000473099 RELBQ01201 579 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 BAXQ07812 192 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 KLRD1Q13241 179 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 DIAPH2-AS1Q14236 149 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 HABP2Q14520 560 aaPredicted RBP10.37□□□□□ -0.75
VPS13D-205ENST00000473099 IZUMO4Q1ZYL8 232 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 VMA21Q3ZAQ7 101 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 Q5PR19 223 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 ZNF767PQ75MW2 155 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 MOB3BQ86TA1 216 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 LINC01356Q8N9X3 169 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 MALSU1Q96EH3 234 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 MAGT1Q9H0U3 335 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 FOXA2Q9Y261 457 aaPredicted RBP10.37□□□□□ -0.75
VPS13D-205ENST00000473099 ZNF257Q9Y2Q1 563 aa10.37□□□□□ -0.75
VPS13D-205ENST00000473099 CSMD1Q96PZ7 3565 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 A0A096LNT2 108 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 A0A1W2PPI3 338 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 J3QLI3 93 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 UPK2O00526 184 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 SPDEFO95238 335 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 IL6RP08887 468 aaPredicted RBP10.36□□□□□ -0.75
VPS13D-205ENST00000473099 STX12Q86Y82 276 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 PUSL1Q8N0Z8 303 aaKnown RBP10.36□□□□□ -0.75
VPS13D-205ENST00000473099 TMEM14BQ9NUH8 114 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 NUP50Q9UKX7 468 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 PLXNB1O43157 2135 aa10.36□□□□□ -0.75
VPS13D-205ENST00000473099 FBN2P35556 2912 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 MSGN1A6NI15 193 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 KBTBD11O94819 623 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 IFNA7P01567 189 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 IFNA17P01571 189 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 SAA1P0DJI8 122 aaPredicted RBP10.35□□□□□ -0.75
VPS13D-205ENST00000473099 CAV2P51636 162 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 RPP30P78346 268 aaKnown RBP10.35□□□□□ -0.75
VPS13D-205ENST00000473099 IFITM2Q01629 132 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 VKORC1L1Q8N0U8 176 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 TEX45Q8NA69 505 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 OR5B3Q8NH48 314 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 TMEM167AQ8TBQ9 72 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 DTD1Q8TEA8 209 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 REG4Q9BYZ8 158 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 RBKSQ9H477 322 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 PSENENQ9NZ42 101 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 AUP1Q9Y679 476 aa10.35□□□□□ -0.75
VPS13D-205ENST00000473099 CEBPZOSA8MTT3 80 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 TIMM23O14925 209 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 NPFFO15130 113 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 NXPH3O95157 252 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 BRS3P32247 399 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 PAX9P55771 341 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 OR2B8PP59922 312 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 HSPE1P61604 102 aaKnown RBP10.34□□□□□ -0.75
VPS13D-205ENST00000473099 EWSR1Q01844 656 aaKnown RBP eCLIP10.34□□□□□ -0.75
VPS13D-205ENST00000473099 PRB3Q04118 309 aaPredicted RBP10.34□□□□□ -0.75
VPS13D-205ENST00000473099 TEX261Q6UWH6 196 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 TMEM252Q8N6L7 170 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 OR8H1Q8NGG4 311 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 STOML3Q8TAV4 291 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 PHYHIPLQ96FC7 376 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 ZNF471Q9BX82 626 aaPredicted RBP10.34□□□□□ -0.75
VPS13D-205ENST00000473099 QTRT1Q9BXR0 403 aaKnown RBP10.34□□□□□ -0.75
VPS13D-205ENST00000473099 HIPK2Q9H2X6 1198 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 HILPDAQ9Y5L2 63 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 U3KQ87 197 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 POLQO75417 2590 aa10.34□□□□□ -0.75
VPS13D-205ENST00000473099 BORCS7-ASMTA0A0B4J1R7 106 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 CENPVL3A0A0U1RRI6 287 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 SRRM4A7MD48 611 aaKnown RBP10.33□□□□□ -0.76
VPS13D-205ENST00000473099 JTBO76095 146 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 VENTXO95231 258 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 MOSP00540 346 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 TPT1P13693 172 aaKnown RBP10.33□□□□□ -0.76
VPS13D-205ENST00000473099 MAS1LP35410 378 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 SULT1A1P50225 295 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 ATP5IP56385 69 aaPredicted RBP10.33□□□□□ -0.76
VPS13D-205ENST00000473099 RPL8P62917 257 aaKnown RBP10.33□□□□□ -0.76
VPS13D-205ENST00000473099 HBG1P69891 147 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 HBG2P69892 147 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 LHFPL4Q7Z7J7 247 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 MRPL41Q8IXM3 137 aaKnown RBP10.33□□□□□ -0.76
VPS13D-205ENST00000473099 MMD2Q8IY49 270 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 STPG2Q8N412 459 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 OR2T10Q8NGZ9 312 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 CFHR4Q92496 578 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 COMMD5Q9GZQ3 224 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 C7orf69Q9H7B7 122 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 ENY2Q9NPA8 101 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 HIF1ANQ9NWT6 349 aa10.33□□□□□ -0.76
VPS13D-205ENST00000473099 PAIP2BQ9ULR5 123 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms