RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 KIR2DS2P43631 304 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 MECP2P51608 486 aaKnown RBP12.39□□□□□ -0.43
COL9A3-208ENST00000469802 ARPC4P59998 168 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 KLK9Q2XQG4 91 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 CCL28Q9NRJ3 127 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 KLK9Q9UKQ9 250 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 DMRT1Q9Y5R6 373 aa12.39□□□□□ -0.43
COL9A3-208ENST00000469802 HMX3A6NHT5 357 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 RBFOX2O43251 390 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL9A3-208ENST00000469802 PPYP01298 95 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 RPL27AP46776 148 aaKnown RBP12.38□□□□□ -0.43
COL9A3-208ENST00000469802 ATP5G2Q06055 141 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 TATDN3Q17R31 274 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 C15orf32Q32M92 178 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 FAM209BQ5JX69 171 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 C19orf35Q6ZS72 473 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 SLC25A42Q86VD7 318 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 SGPP2Q8IWX5 399 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 Q8N402 240 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 SECTM1Q8WVN6 248 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 SLC2A9Q9NRM0 540 aa12.38□□□□□ -0.43
COL9A3-208ENST00000469802 DYNC2H1Q8NCM8 4307 aaKnown RBP12.38□□□□□ -0.43
COL9A3-208ENST00000469802 CSMD3Q7Z407 3707 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 OR2J3O76001 311 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 HRASP01112 189 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 CRYGCP07315 174 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 TIMM50Q3ZCQ8 353 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 LCN12Q6JVE5 192 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 ADAMTSL5Q6ZMM2 481 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 ZBTB34Q8NCN2 500 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 MUC7Q8TAX7 377 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 FANCD2OSQ96PS1 177 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 ZMAT4Q9H898 229 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 DIABLOQ9NR28 239 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 BET1LQ9NYM9 111 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 PEMTQ9UBM1 199 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 ANAPC10Q9UM13 185 aa12.37□□□□□ -0.43
COL9A3-208ENST00000469802 IZUMO1RA6ND01 250 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 CGB1A6NKQ9 187 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 TNFSF12O43508 249 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 AIREO43918 545 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 AREGP15514 252 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 TGFBR1P36897 503 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 CBX5P45973 191 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 RPL8P62917 257 aaKnown RBP12.36□□□□□ -0.43
COL9A3-208ENST00000469802 POU2AF1Q16633 256 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 OR4A47Q6IF82 309 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 CROCCP3Q8IVE0 287 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 OR5AP2Q8NGF4 316 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 OR2K2Q8NGT1 345 aa12.36□□□□□ -0.43
COL9A3-208ENST00000469802 XRCC3O43542 346 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 CTRB1P17538 263 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 HLA-GP17693 338 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 CASC10Q5T4H9 136 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 CTRB2Q6GPI1 263 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 SSX9Q7RTT3 188 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 SPAG16Q8N0X2 631 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 OR4A5Q8NH83 315 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 GIMAP1Q8WWP7 306 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 KCTD12Q96CX2 325 aaKnown RBP12.35□□□□□ -0.43
COL9A3-208ENST00000469802 YIPF6Q96EC8 236 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 CCDC140Q96MF4 163 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 FYTTD1Q96QD9 318 aaKnown RBP12.35□□□□□ -0.43
COL9A3-208ENST00000469802 CITED4Q96RK1 184 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 SLC5A7Q9GZV3 580 aa12.35□□□□□ -0.43
COL9A3-208ENST00000469802 PPP5D1E7EU14 171 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 FGF2P09038 288 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 MYOD1P15172 320 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 PSMB6P28072 239 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 TAS2R31P59538 309 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 CATR1Q13166 79 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 UBE2NLQ5JXB2 153 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 ZNF818PQ6ZRF7 136 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 GTSCR1Q86UQ5 136 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 LAX1Q8IWV1 398 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 AIFM2Q9BRQ8 373 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 FBXL7Q9UJT9 491 aa12.34□□□□□ -0.43
COL9A3-208ENST00000469802 IGLV11-55A0A075B6I3 123 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 DPPA5A6NC42 116 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 MEIS3P1A6NDR6 274 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 LGALS9O00182 355 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 SULT1C2O00338 296 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 NDUFB8O95169 186 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 HPRT1P00492 218 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 FCER2P06734 321 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 RPS19P39019 145 aaKnown RBP12.33□□□□□ -0.44
COL9A3-208ENST00000469802 FXYD4P59646 89 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 OR2B8PP59922 312 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 CD300EQ496F6 205 aaPredicted RBP12.33□□□□□ -0.44
COL9A3-208ENST00000469802 TMEM17Q86X19 198 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 EDA2RQ9HAV5 297 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 ZC4H2Q9NQZ6 224 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 STARD9Q9P2P6 4700 aa12.33□□□□□ -0.44
COL9A3-208ENST00000469802 IGLC7A0M8Q6 106 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 C2orf70A6NJV1 201 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 GGCTO75223 188 aaKnown RBP12.32□□□□□ -0.44
COL9A3-208ENST00000469802 DHFRP00374 187 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 HLA-AP01891 365 aaKnown RBP12.32□□□□□ -0.44
COL9A3-208ENST00000469802 NQO2P16083 231 aa12.32□□□□□ -0.44
COL9A3-208ENST00000469802 HIST1H1BP16401 226 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms