RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 RAMP3O60896 148 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 KBTBD11O94819 623 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 HPRT1P00492 218 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 MAS1LP35410 378 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 VKORC1L1Q8N0U8 176 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 ADAD2Q8NCV1 583 aaKnown RBP14.29□□□□□ -0.12
HOXD3-204ENST00000459979 DYNC2LI1Q8TCX1 351 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 MIXL1Q9H2W2 232 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 BET1LQ9NYM9 111 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 EXTL2Q9UBQ6 330 aa14.29□□□□□ -0.12
HOXD3-204ENST00000459979 LINC01619G3V211 115 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 HSPB1P04792 205 aaKnown RBP14.28□□□□□ -0.12
HOXD3-204ENST00000459979 IL6RP08887 468 aaPredicted RBP14.28□□□□□ -0.12
HOXD3-204ENST00000459979 TAS2R31P59538 309 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 C9orf66Q5T8R8 295 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 OR4A5Q8NH83 315 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 ABHD1Q96SE0 405 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 PHB2Q99623 299 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 ALX4Q9H161 411 aaPredicted RBP14.28□□□□□ -0.12
HOXD3-204ENST00000459979 PLEKHA2Q9HB19 425 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 MTFP1Q9UDX5 166 aa14.28□□□□□ -0.12
HOXD3-204ENST00000459979 PGLYRP1O75594 196 aaPredicted RBP14.27□□□□□ -0.13
HOXD3-204ENST00000459979 FGF2P09038 288 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 OR9G9P0C7N8 305 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 AADACL3Q5VUY0 350 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 LPCAT3Q6P1A2 487 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 CMTM1Q8IZ96 169 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 CADM3Q8N126 398 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 TTC9CQ8N5M4 171 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 USMG5Q96IX5 58 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 FXYD6Q9H0Q3 95 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 ZNF355PQ9NSJ1 428 aa14.27□□□□□ -0.13
HOXD3-204ENST00000459979 CCDC59Q9P031 241 aaKnown RBP14.27□□□□□ -0.13
HOXD3-204ENST00000459979 SORL1Q92673 2214 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 IGHV4OR15-8A0A075B7B6 117 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 A0A087WW49 117 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 SEC14L6B5MCN3 397 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 GPR31O00270 319 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 CTDSP2O14595 271 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 IGHV3-11P01762 117 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 NQO2P16083 231 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 TBPP20226 339 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 F2RP25116 425 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 INSL3P51460 131 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 UCP3P55916 312 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 TSPAN5P62079 268 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 OR4A47Q6IF82 309 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 OR51H1Q8NH63 302 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 OR52I2Q8NH67 350 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 COMMD9Q9P000 198 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 KLK11Q9UBX7 282 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 SCOCQ9UIL1 159 aa14.26□□□□□ -0.13
HOXD3-204ENST00000459979 TRBV9A0A0B4J1U6 114 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 C13orf42A0A1B0GVH6 325 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 TEX22C9J3V5 150 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 MPPED1O15442 326 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 ZNF735P0CB33 412 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 RPL8P62917 257 aaKnown RBP14.25□□□□□ -0.13
HOXD3-204ENST00000459979 SSBP1Q04837 148 aaKnown RBP14.25□□□□□ -0.13
HOXD3-204ENST00000459979 C10orf55Q5SWW7 151 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 SLC25A42Q86VD7 318 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 LAX1Q8IWV1 398 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 DCUN1D4Q92564 292 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 RSRP1Q9BUV0 290 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 RANGRFQ9HD47 186 aaPredicted RBP14.25□□□□□ -0.13
HOXD3-204ENST00000459979 FAM212BQ9NTI7 297 aaPredicted RBP14.25□□□□□ -0.13
HOXD3-204ENST00000459979 COA4Q9NYJ1 87 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 RABL2AQ9UBK7 228 aaPredicted RBP14.25□□□□□ -0.13
HOXD3-204ENST00000459979 RABL2BQ9UNT1 228 aa14.25□□□□□ -0.13
HOXD3-204ENST00000459979 H3BMQ9 156 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 OVOL1O14753 267 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 RGS5O15539 181 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 RLN1P04808 185 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 APELAP0DMC3 54 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 RPL27AP46776 148 aaKnown RBP14.24□□□□□ -0.13
HOXD3-204ENST00000459979 MRPS10P82664 201 aaKnown RBP14.24□□□□□ -0.13
HOXD3-204ENST00000459979 DGCR2P98153 550 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 KLK9Q2XQG4 91 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 ZNF343Q6P1L6 599 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 SSX9Q7RTT3 188 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 FCAMRQ8WWV6 532 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 DLX4Q92988 240 aaPredicted RBP14.24□□□□□ -0.13
HOXD3-204ENST00000459979 ISOC1Q96CN7 298 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 DGCR14Q96DF8 476 aaKnown RBP14.24□□□□□ -0.13
HOXD3-204ENST00000459979 SLC2A9Q9NRM0 540 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 KLK9Q9UKQ9 250 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 ZNF257Q9Y2Q1 563 aa14.24□□□□□ -0.13
HOXD3-204ENST00000459979 A0A1B0GW64 132 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 NPIPB5A8MRT5 1133 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 E7EUB6 86 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 GABARAPH6UMI1 98 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 UPK2O00526 184 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 NOL3O60936 208 aaKnown RBP14.23□□□□□ -0.13
HOXD3-204ENST00000459979 HLA-GP17693 338 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 SLURP1P55000 103 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 LHFPL1Q86WI0 220 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 SLC38A6Q8IZM9 456 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 ARRDC1Q8N5I2 433 aa14.23□□□□□ -0.13
HOXD3-204ENST00000459979 SLIRPQ9GZT3 109 aaKnown RBP14.23□□□□□ -0.13
HOXD3-204ENST00000459979 FAM223BA6NKX1 122 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms