RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ACP7Q6ZNF0 438 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 TMEM256Q8N2U0 113 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 DEFB123Q8N688 67 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 HSPB9Q9BQS6 159 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 OPN3Q9H1Y3 402 aaPredicted RBP9.93□□□□□ -0.82
MSH6-204ENST00000445503 MS4A5Q9H3V2 200 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 SPRR3Q9UBC9 169 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 RRHO14718 337 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 PFN1P07737 140 aaKnown RBP9.93□□□□□ -0.82
MSH6-204ENST00000445503 GZMBP10144 247 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 GNG4P50150 75 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 MRPS11P82912 194 aaKnown RBP9.93□□□□□ -0.82
MSH6-204ENST00000445503 FXYD3Q14802 87 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 ZNF124Q15973 351 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 GABRA6Q16445 453 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 ZNF664Q8N3J9 261 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 TXN2Q99757 166 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 TMEM140Q9NV12 185 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 ENSAO43768 121 aaKnown RBP9.93□□□□□ -0.82
MSH6-204ENST00000445503 CXorf1O96002 111 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 GCGP01275 180 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 PRSS8Q16651 343 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 DEFB109BQ30KR1 87 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 SFRP2Q96HF1 295 aa9.93□□□□□ -0.82
MSH6-204ENST00000445503 LNP1A1A4G5 178 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 M0R143 59 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 HPRT1P00492 218 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 IGHV3-48P01763 117 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 OR4A8P0C604 315 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 ZNF25P17030 456 aaPredicted RBP9.92□□□□□ -0.82
MSH6-204ENST00000445503 GNB1P62873 340 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 GNB2P62879 340 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 DAZAP2Q15038 168 aaPredicted RBP9.92□□□□□ -0.82
MSH6-204ENST00000445503 KRTAP27-1Q3LI81 207 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 SLC35E4Q6ICL7 350 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 OR8I2Q8N0Y5 310 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 SARAFQ96BY9 339 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 VAMP8Q9BV40 100 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 NAGKQ9UJ70 344 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 OR5G3P0C626 314 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 CD82P27701 267 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 SPCS3P61009 180 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 RPL31P62899 125 aaKnown RBP9.92□□□□□ -0.82
MSH6-204ENST00000445503 OR5I1Q13606 314 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 Q8NFD4 153 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 TMEM170AQ8WVE7 144 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 FAM122AQ96E09 287 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 NOL4LQ96MY1 436 aaPredicted RBP9.92□□□□□ -0.82
MSH6-204ENST00000445503 TCF19Q9Y242 345 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 VPS13AQ96RL7 3174 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 TRBV6-6A0A0A6YYG2 114 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 ADH4P08319 380 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 GATA2P23769 480 aaPredicted RBP9.92□□□□□ -0.82
MSH6-204ENST00000445503 AMTP48728 403 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 SUMO1P63165 101 aaKnown RBP9.92□□□□□ -0.82
MSH6-204ENST00000445503 FOXF2Q12947 444 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 RNFT1Q5M7Z0 435 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 TEPPQ6URK8 271 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 NPVFQ9HCQ7 196 aa9.92□□□□□ -0.82
MSH6-204ENST00000445503 CASP6P55212 293 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 ZNF295-AS1Q8N0V1 137 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 NHLRC2Q8NBF2 726 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 OR4S2Q8NH73 311 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 SPTBN5Q9NRC6 3674 aaKnown RBP9.91□□□□□ -0.82
MSH6-204ENST00000445503 ACACAQ13085 2346 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 PLCE1Q9P212 2302 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 TRGV10A0A0A0MS01 117 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 TRAV3A0A0B4J244 114 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 ACP1P24666 158 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 ZNF146Q15072 292 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 TGIF2LYQ8IUE0 185 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 ZNF586Q9NXT0 402 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 CECR9P0C854 216 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 CRYBB3P26998 211 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 REG1BP48304 166 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 SLC24A4Q8NFF2 622 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 COQ2Q96H96 371 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 OR2V2Q96R30 315 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 COMMD5Q9GZQ3 224 aa9.91□□□□□ -0.82
MSH6-204ENST00000445503 MRPL18Q9H0U6 180 aaKnown RBP9.91□□□□□ -0.82
MSH6-204ENST00000445503 ZNF331Q9NQX6 463 aaPredicted RBP9.91□□□□□ -0.82
MSH6-204ENST00000445503 OR10J1P30954 320 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 S100A7P31151 101 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 RPEL1Q2QD12 228 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 WDR82Q6UXN9 313 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 LINC01551Q86U37 167 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 DOLPP1Q86YN1 238 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 HELTA6NFD8 242 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.9□□□□□ -0.82
MSH6-204ENST00000445503 ZNF253O75346 499 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 SELLP14151 372 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 MAS1LP35410 378 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 RBMXL3Q8N7X1 1067 aaKnown RBP9.9□□□□□ -0.82
MSH6-204ENST00000445503 OCC1Q8TAD7 63 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 PCNX2A6NKB5 2137 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 CGAP01215 116 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 SPATA31B1PQ5VZV4 182 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 PQLC2Q6ZP29 291 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 BORCS7Q96B45 105 aa9.9□□□□□ -0.82
MSH6-204ENST00000445503 COLQQ9Y215 455 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms