RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CLEC19AQ6UXS0 136 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 TMEM160Q9NX00 188 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 TMEM170BQ5T4T1 132 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 Q6ZT83 130 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 SAXO1Q8IYX7 474 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 RNASE4P34096 147 aaKnown RBP13.09□□□□□ -0.31
PTPRF-206ENST00000429895 BIVMQ86UB2 503 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 OR4X2Q8NGF9 303 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 COPS9Q8WXC6 57 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 LINC01587Q99440 93 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 CFDP00746 253 aaPredicted RBP13.09□□□□□ -0.31
PTPRF-206ENST00000429895 EGR1P18146 543 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 GPR183P32249 361 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 PLP1P60201 277 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 LINC00862A6NCI5 91 aa13.09□□□□□ -0.31
PTPRF-206ENST00000429895 PPP1R27Q86WC6 154 aa13.08□□□□□ -0.31
PTPRF-206ENST00000429895 TOMM7Q9P0U1 55 aa13.08□□□□□ -0.31
PTPRF-206ENST00000429895 RPS11P62280 158 aaKnown RBP eCLIP13.08□□□□□ -0.32
PTPRF-206ENST00000429895 FAM216BQ8N7L0 139 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 SPSB2Q99619 263 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 IGKV1D-42A0A075B6H8 117 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 TRAV24A0A0B4J272 114 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 CSRP2Q16527 193 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 OR1P1Q8NH06 330 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 OR10AG1Q8NH19 301 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 C18orf15Q96N68 181 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 C5orf66Q9H5L9 145 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 GRIFINA4D1Z8 144 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 COX5BP10606 129 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 CYP2G1PQ6ZSU1 146 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 DNAL4O96015 105 aa13.08□□□□□ -0.32
PTPRF-206ENST00000429895 SOD3P08294 240 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 AGAP20933 346 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 CECR9P0C854 216 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 RIPPLY2Q5TAB7 128 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 NUP214P35658 2090 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-206ENST00000429895 CLDND2Q8NHS1 167 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 SLC25A38Q96DW6 304 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 NINQ8N4C6 2090 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 TRBV5-7A0A0A0MS05 114 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 C10orf128Q5T292 105 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 ACP7Q6ZNF0 438 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 ALKBH7Q9BT30 221 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-206ENST00000429895 CFHR5Q9BXR6 569 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 DPH3P1Q9H4G8 78 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 KNTC1P50748 2209 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 FAM90A26D6RGX4 464 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 RAMP1O60894 148 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 TIMM23BQ5SRD1 257 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 C1orf100Q5SVJ3 147 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 WDR82Q6UXN9 313 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 TMEM70Q9BUB7 260 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 PPP1R3EQ9H7J1 279 aa13.07□□□□□ -0.32
PTPRF-206ENST00000429895 FOXD3Q9UJU5 478 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-206ENST00000429895 TRIP12Q14669 1992 aaPredicted RBP13.07□□□□□ -0.32
PTPRF-206ENST00000429895 A0A0G2JMM0 328 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 A0A1W2PPB8 328 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 A0A1W2PRS3 328 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 KIR3DP1A8MWS1 328 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 WISP3O95389 354 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-206ENST00000429895 ASIPP42127 132 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 ZNF385CQ66K41 422 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-206ENST00000429895 MRPL32Q9BYC8 188 aaKnown RBP13.06□□□□□ -0.32
PTPRF-206ENST00000429895 ZNF703Q9H7S9 590 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-206ENST00000429895 GCHFRP30047 84 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 TMEM187Q14656 261 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 TRGV2A0A075B6R0 118 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 FOLR2P14207 255 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 JOSD1Q15040 202 aaPredicted RBP13.06□□□□□ -0.32
PTPRF-206ENST00000429895 ASPHD2Q6ICH7 369 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 FAM181AQ8N9Y4 354 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 PLXNB2O15031 1838 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 TMEM136Q6ZRR5 245 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 DOCK5Q9H7D0 1870 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 MAP1BP46821 2468 aaKnown RBP13.06□□□□□ -0.32
PTPRF-206ENST00000429895 RND3P61587 244 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 CENPWQ5EE01 88 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 TEX45Q8NA69 505 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 TXNDC17Q9BRA2 123 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 DPM3Q9P2X0 92 aa13.06□□□□□ -0.32
PTPRF-206ENST00000429895 IGKV3D-20A0A0C4DH25 116 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 IL6RP08887 468 aaPredicted RBP13.05□□□□□ -0.32
PTPRF-206ENST00000429895 FAM131CQ96AQ9 280 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 C11orf44Q8N8P7 122 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 GLMPQ8WWB7 406 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 SMDT1Q9H4I9 107 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 ARPC1AQ92747 370 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 MIA3Q5JRA6 1907 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 TRAV8-6A0A0B4J262 113 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 SFRP2Q96HF1 295 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 SMIM8Q96KF7 97 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 SEMA5BQ9P283 1151 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 PIN1P1O15428 100 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 HLA-DRB1P01911 266 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 TDGF1P13385 188 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 GLRXP35754 106 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 FHITP49789 147 aa13.05□□□□□ -0.32
PTPRF-206ENST00000429895 ZNFX1Q9P2E3 1918 aaKnown RBP13.05□□□□□ -0.32
PTPRF-206ENST00000429895 KIAA1217Q5T5P2 1943 aa13.04□□□□□ -0.32
PTPRF-206ENST00000429895 TSPAN13O95857 204 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms