RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 KCTD4Q8WVF5 259 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 SLC35B4Q969S0 331 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 BTF3L4Q96K17 158 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 SIGMAR1Q99720 223 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 ULBP3Q9BZM4 244 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 INIPQ9NRY2 104 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 GID8Q9NWU2 228 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 FAM32AQ9Y421 112 aaKnown RBP2.15□□□□□ -2.07
USP40-204ENST00000427947 MMACHCQ9Y4U1 282 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 V9GYQ6 96 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 PTPRQQ9UMZ3 2332 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 CDK13Q14004 1512 aaKnown RBP2.15□□□□□ -2.07
USP40-204ENST00000427947 CASZ1Q86V15 1759 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 NPATQ14207 1427 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 ADGRL3Q9HAR2 1447 aa2.15□□□□□ -2.07
USP40-204ENST00000427947 NUP188Q5SRE5 1749 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 KIF15Q9NS87 1388 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 UGGT2Q9NYU1 1516 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 EEF1E1-BLOC1S5C9J1V9 151 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 EEF1E1O43324 174 aaKnown RBP2.14□□□□□ -2.07
USP40-204ENST00000427947 IGHV1-46P01743 117 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 TRGV3P03979 118 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 HLA-DQB2P05538 268 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 FABP1P07148 127 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 CNTFRP26992 372 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 TGFBR2P37173 567 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 RAB5BP61020 215 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 RPS24P62847 133 aaKnown RBP2.14□□□□□ -2.07
USP40-204ENST00000427947 BSPH1Q075Z2 132 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 EDDM3AQ14507 147 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 C1orf194Q5T5A4 169 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 CYHR1Q6ZMK1 362 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 LRRC25Q8N386 305 aaPredicted RBP2.14□□□□□ -2.07
USP40-204ENST00000427947 TMEM86BQ8N661 226 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 PXT1Q8NFP0 134 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 OR11G2Q8NGC1 345 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 OR2T4Q8NH00 348 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 JOSD2Q8TAC2 188 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 SLC25A44Q96H78 314 aaPredicted RBP2.14□□□□□ -2.07
USP40-204ENST00000427947 CMSS1Q9BQ75 279 aaKnown RBP2.14□□□□□ -2.07
USP40-204ENST00000427947 KIFC1Q9BW19 673 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 TRIM4Q9C037 500 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 ALX4Q9H161 411 aaPredicted RBP2.14□□□□□ -2.07
USP40-204ENST00000427947 TLNRD1Q9H1K6 362 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 CENPHQ9H3R5 247 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 LINC00574Q9H8X3 128 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 CXorf21Q9HAI6 301 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 FAM60AQ9NP50 221 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 ENY2Q9NPA8 101 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 TAS2R1Q9NYW7 299 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 DOK5Q9P104 306 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 PRELID3BQ9Y3B1 194 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 WASHC3Q9Y3C0 194 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 ARL5AQ9Y689 179 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 PXMP4Q9Y6I8 212 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 HIVEP1P15822 2718 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 TCOF1Q13428 1488 aaKnown RBP2.14□□□□□ -2.07
USP40-204ENST00000427947 WDR7Q9Y4E6 1490 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 RAPGEF2Q9Y4G8 1499 aa2.14□□□□□ -2.07
USP40-204ENST00000427947 MAGI3Q5TCQ9 1506 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 TMED7-TICAM2A0A0A6YYA0 188 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 IGHV3-21A0A0B4J1V1 117 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 IGHV3-43A0A0B4J1X8 118 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 TMEM238C9JI98 176 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 H3BSA7 217 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 M0R381 172 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 PGRMC1O00264 195 aaKnown RBP2.13□□□□□ -2.07
USP40-204ENST00000427947 DENRO43583 198 aaKnown RBP2.13□□□□□ -2.07
USP40-204ENST00000427947 GPR75O95800 540 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 LTAP01374 205 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 CA7P43166 264 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 OR1E2P47887 323 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 MARCKSL1P49006 195 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 DEFA1P59665 94 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 RPL19P84098 196 aaKnown RBP2.13□□□□□ -2.07
USP40-204ENST00000427947 FUT5Q11128 374 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 PMAIP1Q13794 54 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 ENDOGQ14249 297 aaKnown RBP2.13□□□□□ -2.07
USP40-204ENST00000427947 CDK10Q15131 360 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 PDGFRLQ15198 375 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 LIN52Q52LA3 116 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 TMEM97Q5BJF2 176 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 ZNF550Q7Z398 422 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 SGPP2Q8IWX5 399 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 SLC35F6Q8N357 371 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 KRTCAP2Q8N6L1 136 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 ZFP62Q8NB50 900 aaPredicted RBP2.13□□□□□ -2.07
USP40-204ENST00000427947 ST20-AS1Q8NBB2 130 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 OR10X1Q8NGY0 326 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 OR2T27Q8NH04 317 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 C12orf43Q96C57 262 aaKnown RBP2.13□□□□□ -2.07
USP40-204ENST00000427947 IP6K3Q96PC2 410 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 PPP1R2P1Q96PQ5 205 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 IL37Q9NZH6 218 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 ZNF492Q9P255 531 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 DHCR7Q9UBM7 475 aaKnown RBP2.13□□□□□ -2.07
USP40-204ENST00000427947 FIS1Q9Y3D6 152 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 ICOSQ9Y6W8 199 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 IQGAP2Q13576 1575 aa2.13□□□□□ -2.07
USP40-204ENST00000427947 ABCA3Q99758 1704 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms