RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 C3orf36Q3SXR2 165 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 SPINK14Q6IE38 97 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 WDR82Q6UXN9 313 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ADTRPQ96IZ2 230 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 UHRF2Q96PU4 802 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ZDHHC11Q9H8X9 412 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM167BQ9NRX6 74 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 LOXL2Q9Y4K0 774 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CABIN1Q9Y6J0 2220 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 DNAH14Q0VDD8 3507 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ISLRO14498 428 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 DLEU1O43261 78 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 IGLV1-44P01699 117 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 OR5G3P0C626 314 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 OR9G9P0C7N8 305 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 C1QTNF9P0C862 333 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ARL14EPLP0DKL9 152 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CGB3P0DN86 165 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CGB7P0DN87 165 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CHRNA7P36544 502 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CTRLP40313 264 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 COMPP49747 757 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 RAB7AP51149 207 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CX3CL1P78423 397 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF816Q0VGE8 651 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 RAB31Q13636 194 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 Q6ZWC4 215 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF114Q8NC26 417 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 OR52L2PQ8NGH6 319 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 OCC1Q8TAD7 63 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 C1orf159Q96HA4 380 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 RNF2Q99496 336 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 OR2J1Q9GZK6 312 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM14BQ9NUH8 114 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 DCAF16Q9NXF7 216 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 MRPL27Q9P0M9 148 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 V9GYV3 84 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 LNP1A1A4G5 178 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 C20orf202A1L168 122 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 C15orf61A6NNL5 157 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 PROP1O75360 226 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 SCGB1D1O95968 90 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CRISP2P16562 243 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 EFNB3Q15768 340 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 RPEL1Q2QD12 228 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 MORN2Q502X0 79 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 TEPPQ6URK8 271 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 Q6ZT83 130 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 TMEM256Q8N2U0 113 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 OR5AU1Q8NGC0 362 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 SLC25A40Q8TBP6 338 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 SMIM12Q96EX1 92 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 TBX15Q96SF7 602 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CDX2Q99626 313 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 COMMD5Q9GZQ3 224 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 AURKAIP1Q9NWT8 199 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 CLCF1Q9UBD9 225 aa4.75□□□□□ -1.65
CCDC88A-203ENST00000412148 ZNF407Q9C0G0 2248 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 DOCK11Q5JSL3 2073 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 CDH23Q9H251 3354 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 A0A1W2PRE2 83 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 SMIM27A0A1W2PRY6 76 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 IGHG3P01860 377 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 HLA-DQA1P01909 254 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 SFTPCP11686 197 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 LOXL3P58215 753 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 ERVK-16P61578 105 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 PMP22Q01453 160 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 PQLC2Q6ZP29 291 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 C19orf35Q6ZS72 473 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 FAM231DQ6ZW35 169 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 GCSAMQ8N6F7 178 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 OR4A16Q8NH70 328 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 OR4S2Q8NH73 311 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 KLF14Q8TD94 323 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 MRPL18Q9H0U6 180 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 SLC45A2Q9UMX9 530 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 TRAV38-1A0A0B4J264 116 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 K7EN84 100 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 MGST3O14880 152 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 NUPR1O60356 82 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 GPX1P07203 203 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 IGHV1-2P23083 117 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 BRS3P32247 399 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 THBS3P49746 956 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 MEOX1P50221 254 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 RPL31P62899 125 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 ZXDAP98168 799 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 C9orf135Q5VTT2 229 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 CST9LP1Q5W188 147 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 Q6ZR03 302 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 Q8N976 141 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 OR13A1Q8NGR1 328 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 DERL1Q9BUN8 251 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 MRPL32Q9BYC8 188 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 DKK4Q9UBT3 224 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 IL19Q9UHD0 177 aa4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 YTHDF2Q9Y5A9 579 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-203ENST00000412148 GON4LQ3T8J9 2241 aa4.73□□□□□ -1.65
CCDC88A-203ENST00000412148 TRAV39A0A0B4J263 110 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms