RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 HEPN1Q6WQI6 88 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 LFNGQ8NES3 379 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 C5orf30Q96GV9 206 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 YPEL2Q96QA6 119 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 PCGF1Q9BSM1 259 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 YAE1D1Q9NRH1 226 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 RNF150Q9ULK6 438 aa10.92□□□□□ -0.66
LIMS1-204ENST00000409441 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIMS1-204ENST00000409441 ZNF469Q96JG9 3925 aaPredicted RBP10.92□□□□□ -0.66
LIMS1-204ENST00000409441 WNK2Q9Y3S1 2297 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 F2RL2O00254 374 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 AVPP01185 164 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 RBP4P02753 201 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 PRH1P02810 166 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 IGHV1-8P0DP01 117 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 ADCYAP1P18509 176 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 PRTN3P24158 256 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 ATP6V0CP27449 155 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 DLX1P56177 255 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 SRSF3P84103 164 aaKnown RBP10.91□□□□□ -0.66
LIMS1-204ENST00000409441 PRB3Q04118 309 aaPredicted RBP10.91□□□□□ -0.66
LIMS1-204ENST00000409441 LTC4SQ16873 150 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 PRAMEF5Q5TYX0 476 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 VMO1Q7Z5L0 202 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 CD300LFQ8TDQ1 290 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 TCTEX1D2Q8WW35 142 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 SH3BGRL3Q9H299 93 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 SIRT7Q9NRC8 400 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 IDI2-AS1Q9NZ38 188 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 PSENENQ9NZ42 101 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 DSCAML1Q8TD84 2053 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 RAB29O14966 203 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 CST7O76096 145 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 NXPH3O95157 252 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 NFYBP25208 207 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 SNCAP37840 140 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 RPL30P62888 115 aaKnown RBP10.91□□□□□ -0.66
LIMS1-204ENST00000409441 TAGLNQ01995 201 aaKnown RBP10.91□□□□□ -0.66
LIMS1-204ENST00000409441 AKR1C1Q04828 323 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 ZNF616Q08AN1 781 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 PEA15Q15121 130 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 MIDNQ504T8 468 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 ATRAIDQ6UW56 229 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 DPPA3Q6W0C5 159 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.91□□□□□ -0.66
LIMS1-204ENST00000409441 OR10A7Q8NGE5 316 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 OR2G3Q8NGZ4 309 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 TBX15Q96SF7 602 aa10.91□□□□□ -0.66
LIMS1-204ENST00000409441 UNKLQ9H9P5 680 aaKnown RBP10.91□□□□□ -0.66
LIMS1-204ENST00000409441 A0A1B0GW64 132 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 BTBD17A6NE02 478 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 SNAPINO95295 136 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 IFNA5P01569 189 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 LOXL3P58215 753 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 HBG1P69891 147 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 HBG2P69892 147 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 IZUMO4Q1ZYL8 232 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 TMEM30BQ3MIR4 351 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 MORN2Q502X0 79 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 TMEM182Q6ZP80 229 aaPredicted RBP10.9□□□□□ -0.66
LIMS1-204ENST00000409441 C1orf229Q6ZS94 237 aaPredicted RBP10.9□□□□□ -0.66
LIMS1-204ENST00000409441 TNFRSF14Q92956 283 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 AGMATQ9BSE5 352 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 PARD6GQ9BYG4 376 aaPredicted RBP10.9□□□□□ -0.66
LIMS1-204ENST00000409441 GSX1Q9H4S2 264 aaPredicted RBP10.9□□□□□ -0.66
LIMS1-204ENST00000409441 TMEM231Q9H6L2 316 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 HSPB7Q9UBY9 170 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 PSG11Q9UQ72 335 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 GAB2Q9UQC2 676 aa10.9□□□□□ -0.66
LIMS1-204ENST00000409441 IGHV3-43A0A0B4J1X8 118 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 DNASE2O00115 360 aaPredicted RBP10.89□□□□□ -0.67
LIMS1-204ENST00000409441 RAMP3O60896 148 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 OR8U8P0C7N1 319 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 IGHV3-43DP0DP04 118 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 GPR12P47775 334 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 ARHGDIBP52566 201 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 Q3ZCU0 254 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 UTF1Q5T230 341 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 FAM53AQ6NSI3 398 aaPredicted RBP10.89□□□□□ -0.67
LIMS1-204ENST00000409441 TMEM217Q8N7C4 229 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 LHX4Q969G2 390 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 PBDC1Q9BVG4 233 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 TMEM133Q9H2Q1 129 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 HIPK2Q9H2X6 1198 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 SMDT1Q9H4I9 107 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.89□□□□□ -0.67
LIMS1-204ENST00000409441 GNG12Q9UBI6 72 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 FAM96BQ9Y3D0 163 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 TLN2Q9Y4G6 2542 aa10.89□□□□□ -0.67
LIMS1-204ENST00000409441 FAM90A9PA6NNJ1 464 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 ST8SIA5O15466 376 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 S1PR2O95136 353 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 RAB7AP51149 207 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 UBE2KP61086 200 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 TNFRSF9Q07011 255 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 ZNF816Q0VGE8 651 aaPredicted RBP10.88□□□□□ -0.67
LIMS1-204ENST00000409441 NCR3LG1Q68D85 454 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 PUSL1Q8N0Z8 303 aaKnown RBP10.88□□□□□ -0.67
LIMS1-204ENST00000409441 FAM213BQ8TBF2 198 aa10.88□□□□□ -0.67
LIMS1-204ENST00000409441 LEAP2Q969E1 77 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms