RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CMYA5Q8N3K9 4069 aa16.95■□□□□ 0.3
CLN3-207ENST00000395653 PF4P02776 101 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 ETV6P41212 452 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 RAB9AP51151 201 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 SCGB2B2Q4G0G5 96 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 C8orf86Q6ZUL3 223 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 SSX9Q7RTT3 188 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 SRSF12Q8WXF0 261 aaKnown RBP16.94■□□□□ 0.3
CLN3-207ENST00000395653 SLC2A9Q9NRM0 540 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 FAM212BQ9NTI7 297 aaPredicted RBP16.94■□□□□ 0.3
CLN3-207ENST00000395653 BET1LQ9NYM9 111 aa16.94■□□□□ 0.3
CLN3-207ENST00000395653 DISC1C4P0D8 188 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 S1PR2O95136 353 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 PGAM2P15259 253 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 CD40LGP29965 261 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 ZNF79Q15937 498 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 OR4A47Q6IF82 309 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 TBC1D26Q86UD7 250 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 OR4C16Q8NGL9 310 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 OR6Q1Q8NGQ2 317 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 OR4A5Q8NH83 315 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 UBE2E2Q96LR5 201 aa16.93■□□□□ 0.3
CLN3-207ENST00000395653 THAP7Q9BT49 309 aaPredicted RBP16.93■□□□□ 0.3
CLN3-207ENST00000395653 MAS1LP35410 378 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 ECI1P42126 302 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 PPP5CP53041 499 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 RND3P61587 244 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 PYDC2Q56P42 97 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 SPANXN2Q5MJ10 180 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 ASPHD1Q5U4P2 390 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 FAAP20Q6NZ36 180 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 ZNF491Q8N8L2 437 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 PHB2Q99623 299 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 SLA2Q9H6Q3 261 aa16.92■□□□□ 0.3
CLN3-207ENST00000395653 MSGN1A6NI15 193 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 H3BUA1 57 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 KIAA0141Q14154 515 aaPredicted RBP16.91■□□□□ 0.3
CLN3-207ENST00000395653 ZNF585BQ52M93 769 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 ETV3LQ6ZN32 361 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 Q8N402 240 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 ZFAND1Q8TCF1 268 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 C4orf3Q8WVX3 66 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 SPIN2AQ99865 258 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 SPIN2BQ9BPZ2 258 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 VSIG4Q9Y279 399 aa16.91■□□□□ 0.3
CLN3-207ENST00000395653 TNCP24821 2201 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 IL6RP08887 468 aaPredicted RBP16.9■□□□□ 0.3
CLN3-207ENST00000395653 MYCNOSP40205 109 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 LPAR6P43657 344 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 ERVK-16P61578 105 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 RPL8P62917 257 aaKnown RBP16.9■□□□□ 0.3
CLN3-207ENST00000395653 C10orf55Q5SWW7 151 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 WFDC9Q8NEX5 89 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 TRIM63Q969Q1 353 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 MRGPRFQ96AM1 343 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 PRRT1Q99946 306 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 HRASLSQ9HDD0 168 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 TMEM140Q9NV12 185 aa16.9■□□□□ 0.3
CLN3-207ENST00000395653 MARCH11A6NNE9 402 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 MPPED1O15442 326 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 FGF2P09038 288 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 PIGPP57054 158 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 SURF2Q15527 256 aaPredicted RBP16.89■□□□□ 0.29
CLN3-207ENST00000395653 CADM3Q8N126 398 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 DMBX1Q8NFW5 382 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 OR13C8Q8NGS7 320 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 MARCH1Q8TCQ1 289 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 P2RX4Q99571 388 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 SLC2A8Q9NY64 477 aa16.89■□□□□ 0.29
CLN3-207ENST00000395653 BRI3O95415 125 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 CTSDP07339 412 aaPredicted RBP16.88■□□□□ 0.29
CLN3-207ENST00000395653 HLA-GP17693 338 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 PI3P19957 117 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 RUNX1Q01196 453 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 OR5T1Q8NG75 326 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 OR51S1Q8NGJ8 323 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 CASTOR1Q8WTX7 329 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 RAX2Q96IS3 184 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 GNB4Q9HAV0 340 aa16.88■□□□□ 0.29
CLN3-207ENST00000395653 CCL24O00175 119 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 UPK2O00526 184 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 CD33P20138 364 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 RPL27AP46776 148 aaKnown RBP16.87■□□□□ 0.29
CLN3-207ENST00000395653 AP3S2P59780 193 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 LINC00482Q8N8I6 264 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 CCDC71LQ8N9Z2 235 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 MS4A10Q96PG2 267 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 COPZ2Q9P299 210 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 H0Y980 276 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 I3L521 148 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 KRASP01116 189 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 OR9G9P0C7N8 305 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 APELAP0DMC3 54 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 FAUP35544 74 aaKnown RBP16.87■□□□□ 0.29
CLN3-207ENST00000395653 TPPP2P59282 170 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 KLF9Q13886 244 aaPredicted RBP16.87■□□□□ 0.29
CLN3-207ENST00000395653 DEFB136Q30KP8 78 aa16.87■□□□□ 0.29
CLN3-207ENST00000395653 MRPL41Q8IXM3 137 aaKnown RBP16.87■□□□□ 0.29
CLN3-207ENST00000395653 ADAD2Q8NCV1 583 aaKnown RBP16.87■□□□□ 0.29
CLN3-207ENST00000395653 DEDD2Q8WXF8 326 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms