RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OR5M8Q8NGP6 311 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 HSPB9Q9BQS6 159 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 RNF150Q9ULK6 438 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 DMRT1Q9Y5R6 373 aa5.51□□□□□ -1.53
LIMA1-202ENST00000394943 MEX3AA1L020 520 aaKnown RBP5.5□□□□□ -1.53
LIMA1-202ENST00000394943 MARCH11A6NNE9 402 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 WIPF1O43516 503 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 ELANEP08246 267 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 LINC00205P59089 165 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 NDPQ00604 133 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 SPAG16Q8N0X2 631 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-202ENST00000394943 TPSG1Q9NRR2 321 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 ING3Q9NXR8 418 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 HSPB7Q9UBY9 170 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 PRNDQ9UKY0 176 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 TMED3Q9Y3Q3 217 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 A0A0B4J293 547 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 PEX14O75381 377 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 RLN1P04808 185 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 OR4E1P0C645 316 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 ANKRD55Q3KP44 614 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 RBMS3Q6XE24 437 aaKnown RBP5.5□□□□□ -1.53
LIMA1-202ENST00000394943 CAPSLQ8WWF8 208 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 FYTTD1Q96QD9 318 aaKnown RBP5.5□□□□□ -1.53
LIMA1-202ENST00000394943 TSC22D3Q99576 134 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 GON7Q9BXV9 100 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 IGLC7A0M8Q6 106 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 VDAC1P21796 283 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 LPAR6P43657 344 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 VDAC2P45880 294 aaPredicted RBP5.5□□□□□ -1.53
LIMA1-202ENST00000394943 CCR6P51684 374 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 TSPAN5P62079 268 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 PRCDQ00LT1 54 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 CD83Q01151 205 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 AWAT1Q58HT5 328 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 LIN54Q6MZP7 749 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 SGPP2Q8IWX5 399 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 CENPSQ8N2Z9 138 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 STPG2Q8N412 459 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 OR51H1Q8NH63 302 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 TCTEX1D2Q8WW35 142 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 R3HDM4Q96D70 268 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 HARBI1Q96MB7 349 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 BEX1Q9HBH7 125 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 ZFP57Q9NU63 452 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 FBXO7Q9Y3I1 522 aa5.5□□□□□ -1.53
LIMA1-202ENST00000394943 ABCA1O95477 2261 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 SPG11Q96JI7 2443 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 FAM181BA6NEQ2 426 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 J3QRK9 145 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 AP4M1O00189 453 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 OR5AC1P0C628 307 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 OR9G9P0C7N8 305 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 CTRB1P17538 263 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 PSMB6P28072 239 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 REG1BP48304 166 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 PPP1R1AQ13522 171 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 DCTN2Q13561 401 aaKnown RBP5.49□□□□□ -1.53
LIMA1-202ENST00000394943 FHL3Q13643 280 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 CTRB2Q6GPI1 263 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 Q6ZS46 218 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 ZNF431Q8TF32 576 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-202ENST00000394943 RHOVQ96L33 236 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 ZNF430Q9H8G1 570 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-202ENST00000394943 TMEM140Q9NV12 185 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 TET2Q6N021 2002 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-202ENST00000394943 A0A0G2JRQ6 117 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 FCGR3BO75015 233 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 IGHV3-7P01780 117 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 TAS2R30P59541 319 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 CX3CL1P78423 397 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 DHRS2Q13268 280 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 PDZD9Q8IXQ8 264 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 LGI3Q8N145 548 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 TEX50A0A1B0GTY4 177 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 PRSS46E5RG02 174 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 FNDC10F2Z333 226 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 ID3Q02535 119 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 TCTEX1D4Q5JR98 221 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 Q71RC1 249 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-202ENST00000394943 OR1L6Q8NGR2 347 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 RASL11BQ9BPW5 248 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 C19orf24Q9BVV8 132 aa5.49□□□□□ -1.53
LIMA1-202ENST00000394943 METTL1Q9UBP6 276 aaKnown RBP5.49□□□□□ -1.53
LIMA1-202ENST00000394943 FCN1O00602 326 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 CRYZL1O95825 349 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 CA2P00918 260 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 H2AFB2P0C5Z0 115 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 ANXA3P12429 323 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 FXYD4P59646 89 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 DEFA1P59665 94 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 DEFA3P59666 94 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 BLCAPP62952 87 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 NDUFA11Q86Y39 141 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 KIAA1456Q9P272 454 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 KCNIP3Q9Y2W7 256 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 CREBBPQ92793 2442 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 IGLV11-55A0A075B6I3 123 aa5.48□□□□□ -1.53
LIMA1-202ENST00000394943 RPL8P62917 257 aaKnown RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms