RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 A0A1W2PRX2 142 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 RPL23AP62750 156 aaKnown RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 QRFPP83859 136 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 RELQ04864 619 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 VMA21Q3ZAQ7 101 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 PYY3Q5JQD4 70 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 MBNL2Q5VZF2 373 aaKnown RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 FLYWCH2Q96CP2 140 aaKnown RBP8.57□□□□□ -1.04
COL6A3-205ENST00000392004 FBLN5Q9UBX5 448 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 OR2W1Q9Y3N9 320 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 WSB1Q9Y6I7 421 aa8.57□□□□□ -1.04
COL6A3-205ENST00000392004 GCN1Q92616 2671 aaKnown RBP8.56□□□□□ -1.04
COL6A3-205ENST00000392004 TNCP24821 2201 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 FHITP49789 147 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 WDR25Q64LD2 544 aaPredicted RBP8.56□□□□□ -1.04
COL6A3-205ENST00000392004 HCP5Q6MZN7 132 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 OR5T1Q8NG75 326 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 ZNF596Q8TC21 504 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 ERGIC1Q969X5 290 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 SLC2A9Q9NRM0 540 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 SELENOKQ9Y6D0 94 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 SRRM5B3KS81 715 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 P2RY1P47900 373 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 PDLIM3Q53GG5 364 aaPredicted RBP8.56□□□□□ -1.04
COL6A3-205ENST00000392004 PLXNB1O43157 2135 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 IGHV4-30-2A0A087WSY4 118 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 CYB5BO43169 146 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 REG1AP05451 166 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 PCP4P48539 62 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 HEPN1Q6WQI6 88 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 NIPSNAP3BQ9BS92 247 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 FAM103A1Q9BTL3 118 aaKnown RBP8.56□□□□□ -1.04
COL6A3-205ENST00000392004 PRO1933Q9H354 126 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 SSUH2Q9Y2M2 353 aa8.56□□□□□ -1.04
COL6A3-205ENST00000392004 ELOA3CA0A087WX78 387 aaPredicted RBP8.55□□□□□ -1.04
COL6A3-205ENST00000392004 A0A087X0M5 115 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 A0A1B0GX30 115 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 ST8SIA3O43173 380 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 SRSF10O75494 262 aaKnown RBP8.55□□□□□ -1.04
COL6A3-205ENST00000392004 RAB7AP51149 207 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 PKIAP61925 76 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 COTL1Q14019 142 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 WDR86Q86TI4 376 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 OR2G3Q8NGZ4 309 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 CLDND2Q8NHS1 167 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 CLEC7AQ9BXN2 247 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 ZNF727A8MUV8 499 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 H3BQ15 152 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 IGLV1-44P01699 117 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 PF4V1P10720 104 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 KRTAP10-9P60411 292 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 RUSC1-AS1Q66K80 236 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 REC114Q7Z4M0 266 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 NUP37Q8NFH4 326 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 SMDT1Q9H4I9 107 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 IDI2-AS1Q9NZ38 188 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 TMED3Q9Y3Q3 217 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 IGKV1D-17A0A075B6S4 117 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 C3orf85A0A1B0GTC6 90 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 RBFOX3A6NFN3 312 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 CTSDP07339 412 aaPredicted RBP8.55□□□□□ -1.04
COL6A3-205ENST00000392004 FABP4P15090 132 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 CD81P60033 236 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 HAGHQ16775 308 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 C16orf54Q6UWD8 224 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 LYPD6BQ8NI32 183 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 PLA2G2EQ9NZK7 142 aa8.55□□□□□ -1.04
COL6A3-205ENST00000392004 AMMECR1Q9Y4X0 333 aaPredicted RBP8.55□□□□□ -1.04
COL6A3-205ENST00000392004 A0A0A6YYD4 124 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 RAB29O14966 203 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 IL15RAQ13261 267 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 ZNF124Q15973 351 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 ZNF429Q86V71 674 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 LHFPL1Q86WI0 220 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 EAF1Q96JC9 268 aaPredicted RBP8.54□□□□□ -1.04
COL6A3-205ENST00000392004 GINS3Q9BRX5 216 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 IGHV3OR16-8A0A075B7F1 116 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 IGKV1D-8A0A087WSZ0 117 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 HIST1H1BP16401 226 aaKnown RBP8.54□□□□□ -1.04
COL6A3-205ENST00000392004 DDTP30046 118 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 ELLP55199 621 aaPredicted RBP8.54□□□□□ -1.04
COL6A3-205ENST00000392004 HIST1H3AP68431 136 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 BAXQ07812 192 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 ZNF266Q14584 549 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 LYZL2Q7Z4W2 148 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 R3HDM4Q96D70 268 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 TVP23CQ96ET8 276 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 MGAM2Q2M2H8 2515 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 CXorf65A6NEN9 183 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 HRASP01112 189 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 RBP4P02753 201 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 ADH4P08319 380 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 LYPD6Q86Y78 171 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 GPR61Q9BZJ8 451 aa8.54□□□□□ -1.04
COL6A3-205ENST00000392004 IGHV4-61A0A0C4DH41 118 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 ZFP92A6NM28 416 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 SLC31A2O15432 143 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 MBPP02686 304 aaPredicted RBP8.53□□□□□ -1.04
COL6A3-205ENST00000392004 OR9G1Q8NH87 305 aa8.53□□□□□ -1.04
COL6A3-205ENST00000392004 RARRES2Q99969 163 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms