RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 HBZP02008 142 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 CTXN2P0C2S0 81 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 IGKV1-13P0DP09 117 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 EFNA4P52798 201 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 MRPS11P82912 194 aaKnown RBP10.25□□□□□ -0.77
CIITA-202ENST00000381835 THNSL2Q86YJ6 484 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 TIMD4Q96H15 378 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 CHODLQ9H9P2 273 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 OR1A1Q9P1Q5 309 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 GNG13Q9P2W3 67 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 PTPN13Q12923 2485 aa10.25□□□□□ -0.77
CIITA-202ENST00000381835 B4DEV8 164 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 PPP1R2P9O14990 202 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 NDUFB3O43676 98 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 FCN3O75636 299 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 DFFBO76075 338 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 IFNA5P01569 189 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 IL2RGP31785 369 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 DEFA6Q01524 100 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 LRRC10Q5BKY1 277 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 PDZD11Q5EBL8 140 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 CDPF1Q6NVV7 123 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 ZNF295-AS1Q8N0V1 137 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 OR13D1Q8NGV5 346 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 RAB1CQ92928 201 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 GALMQ96C23 342 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 NBPF19A0A087WUL8 3843 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 LOC102723971A0A1B0GUV8 181 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 H3BP45 60 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 DVL1O14640 695 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 PAX9P55771 341 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 RAB11AP62491 216 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 LTC4SQ16873 150 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 H1FXQ92522 213 aaKnown RBP10.24□□□□□ -0.77
CIITA-202ENST00000381835 NRGNQ92686 78 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 LURAP1Q96LR2 239 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 CABLES2Q9BTV7 478 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 OR6C3Q9NZP0 311 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 KAAG1Q9UBP8 84 aa10.24□□□□□ -0.77
CIITA-202ENST00000381835 MED13LQ71F56 2210 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 ELOA3CA0A087WX78 387 aaPredicted RBP10.23□□□□□ -0.77
CIITA-202ENST00000381835 ZFP92A6NM28 416 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 H0Y980 276 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 GZMHP20718 246 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 GFI1BQ5VTD9 330 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 FAM210BQ96KR6 192 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 GPR61Q9BZJ8 451 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 CSMD2Q7Z408 3487 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 TRGV10A0A0A0MS01 117 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 IGHV3-43A0A0B4J1X8 118 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 SPINT2O43291 252 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 PGLYRP1O75594 196 aaPredicted RBP10.23□□□□□ -0.77
CIITA-202ENST00000381835 TUSC2O75896 110 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 TRGC1P0CF51 173 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 IGHV3-43DP0DP04 118 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 CEACAM6P40199 344 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 TMEM267Q0VDI3 215 aaPredicted RBP10.23□□□□□ -0.77
CIITA-202ENST00000381835 FAM53AQ6NSI3 398 aaPredicted RBP10.23□□□□□ -0.77
CIITA-202ENST00000381835 TRAT1Q6PIZ9 186 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 H1FOOQ8IZA3 346 aaPredicted RBP10.23□□□□□ -0.77
CIITA-202ENST00000381835 HIST3H2BBQ8N257 126 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 ZNF525Q8N782 197 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 OR52L2PQ8NGH6 319 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 OR10G4Q8NGN3 311 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 IL22RA2Q969J5 263 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 HIPK2Q9H2X6 1198 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 GFOD1Q9NXC2 390 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 FBN2P35556 2912 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 ABCA12Q86UK0 2595 aa10.23□□□□□ -0.77
CIITA-202ENST00000381835 ARHGAP32A7KAX9 2087 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 POLQO75417 2590 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 TRAV1-1A0A0B4J248 108 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 C15orf65H3BRN8 121 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 FSTL3O95633 263 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 S100GP29377 79 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 GPX4P36969 197 aaPredicted RBP10.22□□□□□ -0.77
CIITA-202ENST00000381835 RPL31P62899 125 aaKnown RBP10.22□□□□□ -0.77
CIITA-202ENST00000381835 RNASE11Q8TAA1 199 aaKnown RBP10.22□□□□□ -0.77
CIITA-202ENST00000381835 SCGB1C1Q8TD33 95 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 IGFBPL1Q8WX77 278 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 MAP1AP78559 2803 aaPredicted RBP10.22□□□□□ -0.77
CIITA-202ENST00000381835 GCN1Q92616 2671 aaKnown RBP10.22□□□□□ -0.77
CIITA-202ENST00000381835 A0A0G2JRQ6 117 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 CLDN34H7C241 214 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 LY86O95711 162 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 IGHV4-39P01824 125 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 F2RP25116 425 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 GPR6P46095 362 aaPredicted RBP10.22□□□□□ -0.77
CIITA-202ENST00000381835 PNRC1Q12796 327 aaPredicted RBP10.22□□□□□ -0.77
CIITA-202ENST00000381835 ZNF787Q6DD87 383 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 ABHD5Q8WTS1 349 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 FRZBQ92765 325 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 NINJ1Q92982 152 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 RSG1Q9BU20 258 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 CALYQ9NYX4 217 aa10.22□□□□□ -0.77
CIITA-202ENST00000381835 ANKRD17O75179 2603 aaKnown RBP10.21□□□□□ -0.77
CIITA-202ENST00000381835 hADV38S2A0JD32 116 aa10.21□□□□□ -0.77
CIITA-202ENST00000381835 SERPINE2P07093 398 aa10.21□□□□□ -0.77
CIITA-202ENST00000381835 FABP4P15090 132 aa10.21□□□□□ -0.77
CIITA-202ENST00000381835 HIST1H1BP16401 226 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms