RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ABHD17AQ96GS6 310 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 GFOD1Q9NXC2 390 aa11.02□□□□□ -0.65
CCDC3-202ENST00000378839 A0A087X0M5 115 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 A0A1B0GX30 115 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 PRSS46E5RG02 174 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 HPRT1P00492 218 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 VDAC2P45880 294 aaPredicted RBP11.01□□□□□ -0.65
CCDC3-202ENST00000378839 TNFAIP6P98066 277 aaPredicted RBP11.01□□□□□ -0.65
CCDC3-202ENST00000378839 OR10G9Q8NGN4 311 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 OR10G7Q8NGN6 311 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 PINX1Q96BK5 328 aaKnown RBP11.01□□□□□ -0.65
CCDC3-202ENST00000378839 SLC39A9Q9NUM3 307 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 METTL1Q9UBP6 276 aaKnown RBP11.01□□□□□ -0.65
CCDC3-202ENST00000378839 VAX2Q9UIW0 290 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 MRGPRGQ86SM5 289 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 ABHD12Q8N2K0 398 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 SDSLQ96GA7 329 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 TCEAL7Q9BRU2 100 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 SDF2L1Q9HCN8 221 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 DOK5Q9P104 306 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 RNF7Q9UBF6 113 aa11.01□□□□□ -0.65
CCDC3-202ENST00000378839 ZNF705GA8MUZ8 300 aaPredicted RBP11□□□□□ -0.65
CCDC3-202ENST00000378839 IFNA17P01571 189 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 THBDP07204 575 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 ZNF439Q8NDP4 499 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 TMEM140Q9NV12 185 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 KBTBD11-OT1A0A1B0GTJ5 212 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 IFITM10A6NMD0 228 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 ATP6V1FQ16864 119 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 PRR30Q53SZ7 412 aaPredicted RBP11□□□□□ -0.65
CCDC3-202ENST00000378839 PRAMEF5Q5TYX0 476 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 CISD2Q8N5K1 135 aaKnown RBP11□□□□□ -0.65
CCDC3-202ENST00000378839 RAB24Q969Q5 203 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 GAR1Q9NY12 217 aaKnown RBP11□□□□□ -0.65
CCDC3-202ENST00000378839 SH3BGRL2Q9UJC5 107 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 TP53TG5Q9Y2B4 290 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 DPRXA6NFQ7 191 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 CRYABP02511 175 aaKnown RBP11□□□□□ -0.65
CCDC3-202ENST00000378839 CCL8P80075 99 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 IL19Q9UHD0 177 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 LAMP3Q9UQV4 416 aa11□□□□□ -0.65
CCDC3-202ENST00000378839 DYSFO75923 2080 aa10.99□□□□□ -0.65
CCDC3-202ENST00000378839 ZCCHC14Q8WYQ9 949 aaKnown RBP10.99□□□□□ -0.65
CCDC3-202ENST00000378839 CIB3Q96Q77 187 aaPredicted RBP10.99□□□□□ -0.65
CCDC3-202ENST00000378839 DMRT1Q9Y5R6 373 aa10.99□□□□□ -0.65
CCDC3-202ENST00000378839 TANC2Q9HCD6 1990 aa10.99□□□□□ -0.65
CCDC3-202ENST00000378839 NPPCP23582 126 aa10.99□□□□□ -0.65
CCDC3-202ENST00000378839 GNG10P50151 68 aa10.99□□□□□ -0.65
CCDC3-202ENST00000378839 ZNF788Q6ZQV5 615 aa10.99□□□□□ -0.65
CCDC3-202ENST00000378839 C1QL4Q86Z23 238 aa10.99□□□□□ -0.65
CCDC3-202ENST00000378839 MAP1BP46821 2468 aaKnown RBP10.98□□□□□ -0.65
CCDC3-202ENST00000378839 TRAV38-1A0A0B4J264 116 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 PMS2P11Q13670 270 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 KRTCAP3Q53RY4 240 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 S1PR3Q99500 378 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 WDR83OSQ9Y284 106 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 CTXND1A0A1B0GTU2 59 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 CD1BP29016 333 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 SPCS3P61009 180 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 MEF2BQ02080 365 aaPredicted RBP10.98□□□□□ -0.65
CCDC3-202ENST00000378839 ADIPOQQ15848 244 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 PDLIM3Q53GG5 364 aaPredicted RBP10.98□□□□□ -0.65
CCDC3-202ENST00000378839 OR4A16Q8NH70 328 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 PPP1R35Q8TAP8 253 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 P2RX4Q99571 388 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 APC2O95996 2303 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 ROS1P08922 2347 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 CYB5BO43169 146 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 TREML4Q6UXN2 200 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 WFDC8Q8IUA0 241 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 WFIKKN1Q96NZ8 548 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 MS4A5Q9H3V2 200 aa10.98□□□□□ -0.65
CCDC3-202ENST00000378839 ZGRF1Q86YA3 2104 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 RBFOX2O43251 390 aaKnown RBP eCLIP10.97□□□□□ -0.65
CCDC3-202ENST00000378839 TRGC2P03986 189 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 SSTP61278 116 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 LYG1Q8N1E2 194 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 MGST2Q99735 147 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 SRRM4A7MD48 611 aaKnown RBP10.97□□□□□ -0.65
CCDC3-202ENST00000378839 TCAPO15273 167 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 IGKV1-16P04430 117 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 BSPH1Q075Z2 132 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 OR4A47Q6IF82 309 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 TCF19Q9Y242 345 aa10.97□□□□□ -0.65
CCDC3-202ENST00000378839 ACACAQ13085 2346 aa10.96□□□□□ -0.65
CCDC3-202ENST00000378839 FAM90A9PA6NNJ1 464 aa10.96□□□□□ -0.65
CCDC3-202ENST00000378839 PAGE4O60829 102 aa10.96□□□□□ -0.65
CCDC3-202ENST00000378839 IFNA10P01566 189 aa10.96□□□□□ -0.65
CCDC3-202ENST00000378839 SOD3P08294 240 aa10.96□□□□□ -0.65
CCDC3-202ENST00000378839 NUP37Q8NFH4 326 aa10.96□□□□□ -0.65
CCDC3-202ENST00000378839 RPUSD4Q96CM3 377 aaKnown RBP10.96□□□□□ -0.65
CCDC3-202ENST00000378839 PATZ1Q9HBE1 687 aaKnown RBP10.96□□□□□ -0.65
CCDC3-202ENST00000378839 GAB2Q9UQC2 676 aa10.96□□□□□ -0.65
CCDC3-202ENST00000378839 OR4A8P0C604 315 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 DDTP30046 118 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 OR52E5Q8NH55 327 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 NCOR1P1Q9H4R4 102 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 HEYLQ9NQ87 328 aaPredicted RBP10.96□□□□□ -0.66
CCDC3-202ENST00000378839 SIRT7Q9NRC8 400 aa10.96□□□□□ -0.66
CCDC3-202ENST00000378839 IDI2-AS1Q9NZ38 188 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms